Variant report

Variant	rs73825577
Chromosome Location	chr4:76813856-76813857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:93)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:93 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:76813720-76813870	BE2_C	brain:	n/a	n/a
2	CTCF	chr4:76813800-76813950	HMEC	breast:	n/a	n/a
3	CTCF	chr4:76813651-76814145	A549	lung:	n/a	n/a
4	CTCF	chr4:76813800-76813950	HRE	kidney:	n/a	n/a
5	CTCF	chr4:76813760-76813910	AG10803	skin:	n/a	n/a
6	CTCF	chr4:76813760-76813910	HCPEpiC	choroid plexus:	n/a	n/a
7	ZNF143	chr4:76813724-76813922	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr4:76813740-76813890	K562	blood:	n/a	n/a
9	CTCF	chr4:76813820-76813970	HMF	breast:	n/a	n/a
10	CTCF	chr4:76813720-76813870	HPF	lung:	n/a	n/a
11	CTCF	chr4:76813720-76813870	HFF	foreskin:	n/a	n/a
12	CTCF	chr4:76813780-76813930	GM12864	blood:	n/a	n/a
13	CTCF	chr4:76813745-76813909	MCF-7	breast:	n/a	n/a
14	CTCF	chr4:76813780-76813930	HCT-116	colon:	n/a	n/a
15	SMC3	chr4:76813817-76813899	Hela-S3	cervix:	n/a	n/a
16	CTCF	chr4:76813780-76813930	BE2_C	brain:	n/a	n/a
17	CTCF	chr4:76813780-76813930	SAEC	small airway:	n/a	n/a
18	CTCF	chr4:76813719-76813909	HepG2	liver:	n/a	n/a
19	CTCF	chr4:76813760-76813910	GM12871	blood:	n/a	n/a
20	CTCF	chr4:76813720-76813870	HCT-116	colon:	n/a	n/a
21	CTCF	chr4:76813740-76813890	GM12865	blood:	n/a	n/a
22	CTCF	chr4:76813760-76813910	HUVEC	blood vessel:	n/a	n/a
23	CTCF	chr4:76813780-76813930	GM06990	blood:	n/a	n/a
24	CTCF	chr4:76813760-76813910	HepG2	liver:	n/a	n/a
25	CTCF	chr4:76813740-76813890	HPAF	blood vessel:	n/a	n/a
26	CTCF	chr4:76813740-76813890	HCM	heart:	n/a	n/a
27	CTCF	chr4:76813720-76813870	K562	blood:	n/a	n/a
28	CTCF	chr4:76813820-76813970	GM12874	blood:	n/a	n/a
29	MXI1	chr4:76813704-76813898	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr4:76813756-76813910	MCF-7	breast:	n/a	n/a
31	CTCF	chr4:76813780-76813930	GM12866	blood:	n/a	n/a
32	CTCF	chr4:76813760-76813910	HEEpiC	esophagus:	n/a	n/a
33	CTCF	chr4:76813760-76813910	GM12864	blood:	n/a	n/a
34	CTCF	chr4:76813740-76813890	GM12867	blood:	n/a	n/a
35	CTCF	chr4:76813800-76813950	GM12871	blood:	n/a	n/a
36	CTCF	chr4:76813720-76813870	NHEK	skin:	n/a	n/a
37	CTCF	chr4:76813760-76813910	Hela-S3	cervix:	n/a	n/a
38	CTCF	chr4:76813760-76813910	GM12874	blood:	n/a	n/a
39	CTCF	chr4:76813740-76813890	HCFaa	heart:	n/a	n/a
40	CTCF	chr4:76813781-76813884	HepG2	liver:	n/a	n/a
41	CTCF	chr4:76813721-76814001	K562	blood:	n/a	n/a
42	CTCF	chr4:76813729-76813932	H1-hESC	embryonic stem cell:	n/a	n/a
43	CTCF	chr4:76813740-76813890	GM12869	blood:	n/a	n/a
44	CTCF	chr4:76813767-76813898	MCF-7	breast:	n/a	n/a
45	CTCF	chr4:76813740-76813890	RPTEC	kidney:	n/a	n/a
46	CTCF	chr4:76813740-76813890	GM12872	blood:	n/a	n/a
47	CTCF	chr4:76813780-76813930	GM12868	blood:	n/a	n/a
48	CTCF	chr4:76813800-76813950	HMF	breast:	n/a	n/a
49	CTCF	chr4:76813740-76813890	Hela-S3	cervix:	n/a	n/a
50	CTCF	chr4:76813760-76813910	HFF-Myc	foreskin:	n/a	n/a

No data

Variant related genes	Relation type
PPEF2	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10009966	0.88[AMR][1000 genomes]
rs10518141	1.00[EUR][1000 genomes]
rs11930088	1.00[EUR][1000 genomes]
rs12498639	1.00[ASN][1000 genomes]
rs13123426	1.00[ASN][1000 genomes]
rs1566975	1.00[ASN][1000 genomes]
rs1976517	1.00[ASN][1000 genomes]
rs1976518	1.00[ASN][1000 genomes]
rs2047984	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089252	1.00[EUR][1000 genomes]
rs4241574	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4241575	1.00[ASN][1000 genomes]
rs4484327	1.00[ASN][1000 genomes]
rs55831742	1.00[ASN][1000 genomes]
rs56056355	1.00[ASN][1000 genomes]
rs59427215	0.88[AFR][1000 genomes]
rs60011229	1.00[EUR][1000 genomes]
rs6532010	1.00[EUR][1000 genomes]
rs7666135	1.00[ASN][1000 genomes]
rs7691712	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9994323	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76813000-76814000	Enhancers	HMEC	breast

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