Variant report

Variant	rs73826490
Chromosome Location	chr4:77945232-77945233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:77945140-77945290	HPF	lung:	n/a	n/a
2	FOXA1	chr4:77944888-77945397	HepG2	liver:	n/a	n/a
3	CTCF	chr4:77945185-77945290	HepG2	liver:	n/a	n/a
4	CEBPB	chr4:77945105-77945365	HepG2	liver:	n/a	n/a
5	RCOR1	chr4:77945134-77945321	HepG2	liver:	n/a	n/a
6	HNF4A	chr4:77945029-77945305	HepG2	liver:	n/a	chr4:77945172-77945187 chr4:77945231-77945245
7	CTCF	chr4:77945173-77945302	LNCaP	prostate:	n/a	n/a
8	NR2F2	chr4:77944934-77945559	HepG2	liver:	n/a	n/a
9	FOXA1	chr4:77944910-77945440	HepG2	liver:	n/a	n/a
10	RAD21	chr4:77945115-77945336	HepG2	liver:	n/a	n/a
11	CTCF	chr4:77945180-77945298	LNCaP	prostate:	n/a	n/a
12	CTCF	chr4:77945160-77945310	HepG2	liver:	n/a	n/a
13	RXRA	chr4:77945087-77945411	HepG2	liver:	n/a	chr4:77945232-77945245 chr4:77945232-77945245
14	RAD21	chr4:77945020-77945395	HepG2	liver:	n/a	n/a
15	CTCF	chr4:77945223-77945281	Kidney_OC	kidney:	n/a	n/a
16	ARID3A	chr4:77945210-77945345	HepG2	liver:	n/a	n/a
17	SMC3	chr4:77945072-77945316	HepG2	liver:	n/a	n/a
18	EP300	chr4:77945073-77945388	HepG2	liver:	n/a	n/a
19	HDAC2	chr4:77945007-77945405	HepG2	liver:	n/a	n/a
20	FOXA1	chr4:77945039-77945448	HepG2	liver:	n/a	n/a
21	FOXA1	chr4:77945103-77945278	T-47D	breast:	n/a	n/a
22	FOXA1	chr4:77945041-77945497	HepG2	liver:	n/a	n/a
23	SP1	chr4:77944938-77945393	HepG2	liver:	n/a	n/a
24	HNF4A	chr4:77945063-77945394	HepG2	liver:	n/a	chr4:77945172-77945187 chr4:77945231-77945245
25	NR2F2	chr4:77944868-77945507	HepG2	liver:	n/a	n/a
26	FOXA2	chr4:77945012-77945371	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:77944617..77946344-chr4:77971042..77973361,2	K562	blood:
2	chr4:77943483..77945819-chr4:77965251..77967167,2	K562	blood:
3	chr4:77869348..77872612-chr4:77944118..77947596,4	K562	blood:

Variant related genes	Relation type
SEPT11	TF binding region
ENSG00000138758	Chromatin interaction

rs_ID	r²[population]
rs1048417	0.94[ASN][1000 genomes]
rs1532449	0.83[ASN][1000 genomes]
rs2703103	0.83[ASN][1000 genomes]
rs73826488	0.83[ASN][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77928200-77960800	Strong transcription	Fetal Intestine Large	intestine
2	chr4:77928600-77947600	Weak transcription	Psoas Muscle	Psoas
3	chr4:77929400-77961800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:77931400-77949400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:77931400-77952000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:77932200-77962000	Strong transcription	Fetal Brain Female	brain
7	chr4:77934000-77957400	Strong transcription	Rectal Mucosa Donor 31	rectum
8	chr4:77935600-77950800	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr4:77935800-77957800	Strong transcription	Duodenum Mucosa	Duodenum
10	chr4:77935800-77960800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:77936000-77957600	Strong transcription	Primary hematopoietic stem cells	blood
12	chr4:77936000-77959200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:77936200-77961800	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:77936400-77949200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:77936600-77949000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:77937000-77949200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:77937200-77948600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr4:77937400-77981400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:77938600-77946800	Strong transcription	GM12878-XiMat	blood
20	chr4:77939200-77948800	Strong transcription	Fetal Intestine Small	intestine
21	chr4:77939800-77947800	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:77939800-77960800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr4:77940000-77946000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:77940000-77947800	Strong transcription	Primary T cells from cord blood	blood
25	chr4:77940000-77950400	Strong transcription	Fetal Lung	lung
26	chr4:77940000-77952600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr4:77940000-77956800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:77940200-77946000	Strong transcription	Colonic Mucosa	Colon
29	chr4:77940200-77946200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:77940200-77946600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr4:77940200-77947800	Strong transcription	Brain Germinal Matrix	brain
32	chr4:77940200-77947800	Strong transcription	Spleen	Spleen
33	chr4:77940600-77947000	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr4:77941200-77945600	Genic enhancers	NHLF	lung
35	chr4:77941800-77947000	Strong transcription	K562	blood
36	chr4:77942000-77952800	Weak transcription	Brain Angular Gyrus	brain
37	chr4:77942200-77945400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr4:77942200-77948600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr4:77942400-77945800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:77942400-77949200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr4:77942400-77952200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr4:77942600-77945600	Genic enhancers	Fetal Muscle Leg	muscle
43	chr4:77942800-77961000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:77943200-77945400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr4:77943200-77949000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:77943200-77954600	Weak transcription	Brain Substantia Nigra	brain
47	chr4:77943400-77952000	Weak transcription	A549	lung
48	chr4:77943600-77945800	Enhancers	HepG2	liver
49	chr4:77943800-77945800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr4:77943800-77946000	Strong transcription	Pancreas	Pancrea

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