Variant report

Variant	rs7382737
Chromosome Location	chr6:73977070-73977071
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73975435..73977276-chr6:73979825..73982235,2	K562	blood:
2	chr6:73962925..73964813-chr6:73974768..73977580,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12203691	0.91[ASN][1000 genomes]
rs4706535	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706536	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4708043	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56846430	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57140549	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57209376	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57385669	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58345476	0.95[ASN][1000 genomes]
rs58356246	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59126262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59378494	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59747599	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60119590	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61123006	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61584268	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61594993	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61633633	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462509	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462517	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73462545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73462547	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7762937	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1030079	chr6:73920050-73984084	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73973400-73985000	Weak transcription	Small Intestine	intestine
2	chr6:73973400-73986400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:73973400-74000400	Weak transcription	Aorta	Aorta
4	chr6:73973600-73978000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:73973600-73978400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:73973600-73983400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:73973600-73984400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:73973600-73985400	Weak transcription	Left Ventricle	heart
9	chr6:73973600-74018600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:73973600-74018600	Weak transcription	A549	lung
11	chr6:73973600-74018800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:73973800-73977600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:73973800-73978000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:73973800-73980600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:73973800-73983400	Weak transcription	Placenta	Placenta
16	chr6:73973800-73985200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:73973800-73995600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:73973800-73995600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:73973800-74000400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:73974000-73980600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:73974000-73980600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:73974000-73983800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:73974000-73983800	Weak transcription	Osteobl	bone
24	chr6:73974000-73985000	Weak transcription	Lung	lung
25	chr6:73974000-73995600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:73974000-74000400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:73974000-74009000	Weak transcription	HSMM	muscle
28	chr6:73974000-74018400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:73974200-73978600	Weak transcription	Brain Substantia Nigra	brain
30	chr6:73974200-73983400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:73974200-73992600	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:73974400-73977200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:73974400-73977600	Weak transcription	Fetal Brain Female	brain
34	chr6:73974400-73977800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:73974400-73977800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:73974400-73977800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:73974400-73980800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:73974400-73983600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:73974400-73983600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:73974400-73983600	Weak transcription	Ovary	ovary
41	chr6:73974400-73984000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:73974400-73986000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:73974400-73986200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:73974400-73986600	Weak transcription	Pancreas	Pancrea
45	chr6:73974400-73986800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:73974400-73986800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:73974400-73986800	Weak transcription	Spleen	Spleen
48	chr6:73974400-73987000	Weak transcription	Primary B cells from cord blood	blood
49	chr6:73974400-74000400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:73974400-74000400	Weak transcription	NHDF-Ad	bronchial

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