Variant report

Variant	rs73827949
Chromosome Location	chr4:79215740-79215741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs55768753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55802115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55881329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55944380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56180852	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56186715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57153735	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57912725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59603738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59642925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60047831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6821315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6829493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6830132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6831343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6838959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6848030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6857213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6857683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827917	1.00[AMR][1000 genomes]
rs73827921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827944	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827976	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827984	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7674794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7689806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv829978	chr4:79144453-79291868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv818246	chr4:79184338-79221851	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79188600-79218400	Weak transcription	Aorta	Aorta
2	chr4:79198600-79217600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:79198600-79220200	Weak transcription	Pancreas	Pancrea
4	chr4:79198600-79221000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:79198600-79241400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:79204000-79217600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:79208400-79220800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:79208400-79229200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:79208800-79218200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:79208800-79236800	Weak transcription	Fetal Intestine Large	intestine
11	chr4:79209200-79217600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:79210600-79218800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:79211200-79216200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:79211400-79217200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:79212200-79215800	Enhancers	HSMMtube	muscle
16	chr4:79212400-79217200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:79212800-79216000	Enhancers	Fetal Kidney	kidney
18	chr4:79212800-79218000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:79213200-79218200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:79213400-79215800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr4:79213600-79215800	Enhancers	Fetal Lung	lung
22	chr4:79213600-79215800	Enhancers	Rectal Smooth Muscle	rectum
23	chr4:79213800-79215800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr4:79213800-79215800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr4:79213800-79215800	Enhancers	HMEC	breast
26	chr4:79213800-79216000	Enhancers	HSMM	muscle
27	chr4:79213800-79217800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:79214000-79215800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:79214000-79217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:79214000-79220200	Weak transcription	Fetal Intestine Small	intestine
31	chr4:79214000-79220200	Weak transcription	Psoas Muscle	Psoas
32	chr4:79214000-79223400	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:79214200-79216200	Weak transcription	HepG2	liver
34	chr4:79214600-79215800	Enhancers	Hela-S3	cervix
35	chr4:79214600-79215800	Enhancers	NHLF	lung
36	chr4:79215000-79215800	Enhancers	Fetal Muscle Leg	muscle
37	chr4:79215200-79215800	Enhancers	Muscle Satellite Cultured Cells	--
38	chr4:79215200-79215800	Enhancers	Right Ventricle	heart
39	chr4:79215400-79215800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:79215400-79215800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:79215400-79215800	Enhancers	NHDF-Ad	bronchial
42	chr4:79215400-79218200	Weak transcription	Brain Germinal Matrix	brain
43	chr4:79215400-79218200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr4:79215600-79215800	Enhancers	NH-A	brain
45	chr4:79215600-79216000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:79215600-79216800	Enhancers	Fetal Heart	heart
47	chr4:79215600-79217400	Weak transcription	Adipose Nuclei	Adipose
48	chr4:79215600-79217400	Weak transcription	Fetal Stomach	stomach
49	chr4:79215600-79217600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:79215600-79217600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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