Variant report

Variant	rs73829243
Chromosome Location	chr3:42633355-42633356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:42620803..42625287-chr3:42629964..42635186,7	MCF-7	breast:
2	chr3:42632973..42636724-chr3:42645956..42649361,3	MCF-7	breast:
3	chr3:42629943..42634676-chr3:42635408..42643782,10	MCF-7	breast:
4	chr3:42632553..42639930-chr3:42692933..42696882,8	K562	blood:

Variant related genes	Relation type
ENSG00000093183	Chromatin interaction
ENSG00000114857	Chromatin interaction
ENSG00000008324	Chromatin interaction
ENSG00000114853	Chromatin interaction
ENSG00000230084	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17074611	1.00[AFR][1000 genomes]
rs73829270	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002944	chr3:42559762-42728909	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42631600-42633400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr3:42631600-42633400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr3:42631600-42633400	Active TSS	Psoas Muscle	Psoas
4	chr3:42631600-42633400	Active TSS	HSMMtube	muscle
5	chr3:42631600-42633800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:42631800-42633400	Active TSS	Right Ventricle	heart
7	chr3:42631800-42633600	Active TSS	H9 Cell Line	embryonic stem cell
8	chr3:42631800-42633600	Active TSS	Fetal Kidney	kidney
9	chr3:42632000-42633400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:42632000-42633400	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr3:42632000-42633400	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr3:42632000-42633600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:42632200-42633600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:42632600-42633400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:42632600-42633400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr3:42632600-42633400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr3:42632600-42633600	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr3:42632600-42633600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:42632800-42633400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:42632800-42633400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr3:42632800-42633400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr3:42632800-42633400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr3:42632800-42633400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr3:42632800-42633400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:42632800-42633400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr3:42632800-42633400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr3:42632800-42633400	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr3:42632800-42633400	Flanking Active TSS	Fetal Stomach	stomach
29	chr3:42632800-42633400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
30	chr3:42632800-42633400	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr3:42632800-42633400	Flanking Active TSS	Thymus	Thymus
32	chr3:42632800-42633600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr3:42632800-42633600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:42632800-42633600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:42632800-42633600	Flanking Active TSS	Brain Angular Gyrus	brain
36	chr3:42632800-42633600	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr3:42632800-42633600	Flanking Active TSS	HUVEC	blood vessel
38	chr3:42632800-42633600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr3:42633000-42633400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:42633000-42633400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:42633000-42633400	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:42633000-42633400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr3:42633000-42633400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr3:42633000-42633400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:42633000-42633400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr3:42633000-42633400	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr3:42633000-42633400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr3:42633000-42633400	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
49	chr3:42633000-42633400	Enhancers	Small Intestine	intestine
50	chr3:42633000-42633400	Flanking Active TSS	Stomach Mucosa	stomach

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