Variant report

Variant	rs73830632
Chromosome Location	chr3:45962791-45962792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:45961740..45963512-chr3:45972118..45973716,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2234352	0.81[AFR][1000 genomes]
rs55668304	0.84[AFR][1000 genomes]
rs59842697	0.81[AFR][1000 genomes]
rs60091281	0.81[AFR][1000 genomes]
rs73830614	0.84[AFR][1000 genomes]
rs73830666	0.81[AFR][1000 genomes]
rs73830667	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45952800-45963600	Weak transcription	Psoas Muscle	Psoas
2	chr3:45952800-45964600	Weak transcription	Fetal Heart	heart
3	chr3:45957400-45963000	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:45957600-45965000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:45957800-45963000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:45957800-45963000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:45957800-45963600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:45957800-45963600	Weak transcription	Colonic Mucosa	Colon
9	chr3:45957800-45969000	Weak transcription	K562	blood
10	chr3:45957800-45971200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:45958000-45962800	Weak transcription	Brain Germinal Matrix	brain
12	chr3:45958000-45964400	Weak transcription	Stomach Mucosa	stomach
13	chr3:45958000-45964600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:45958000-45964800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:45958000-45965000	Weak transcription	Osteobl	bone
16	chr3:45958000-45965200	Weak transcription	HSMM	muscle
17	chr3:45958000-45969000	Weak transcription	NH-A	brain
18	chr3:45958000-45980800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:45958200-45963200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr3:45958200-45963400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:45958400-45963000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr3:45958400-45966200	Strong transcription	Stomach Smooth Muscle	stomach
23	chr3:45958400-45974200	Strong transcription	Fetal Stomach	stomach
24	chr3:45958600-45963000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:45958600-45968800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:45958600-45970000	Weak transcription	Small Intestine	intestine
27	chr3:45958800-45964600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:45958800-45980000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:45958800-45980200	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr3:45958800-45988000	Weak transcription	HUVEC	blood vessel
31	chr3:45959000-45962800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr3:45959000-45966000	Genic enhancers	Fetal Thymus	thymus
33	chr3:45959000-45973600	Weak transcription	Fetal Kidney	kidney
34	chr3:45959200-45979800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:45959200-45980400	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:45959400-45962800	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr3:45959400-45962800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr3:45959400-45965000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:45959400-45965200	Weak transcription	HMEC	breast
40	chr3:45959400-45965800	Genic enhancers	Thymus	Thymus
41	chr3:45959400-45965800	Genic enhancers	Dnd41	blood
42	chr3:45959400-45966000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr3:45959400-45971800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:45959400-45973400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr3:45959400-46009800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:45959600-45965600	Strong transcription	Brain Cingulate Gyrus	brain
47	chr3:45959600-45973200	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr3:45959800-45962800	Strong transcription	Primary T cells from cord blood	blood
49	chr3:45959800-45965600	Weak transcription	Hela-S3	cervix
50	chr3:45959800-45974600	Strong transcription	Fetal Muscle Trunk	muscle

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