Variant report

Variant	rs73831536
Chromosome Location	chr4:85516110-85516111
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85503832..85505734-chr4:85515107..85517969,2	K562	blood:
2	chr4:85503486..85505724-chr4:85514365..85516171,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

rs_ID	r²[population]
rs58848630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59999613	0.90[AFR][1000 genomes]
rs73831535	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73831538	0.84[AFR][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85507800-85518000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:85508800-85531000	Weak transcription	Pancreas	Pancrea
3	chr4:85510000-85516200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:85511200-85516600	Enhancers	Fetal Intestine Large	intestine
5	chr4:85511200-85516600	Enhancers	Fetal Intestine Small	intestine
6	chr4:85511600-85518400	Enhancers	Fetal Heart	heart
7	chr4:85512000-85517000	Weak transcription	NHEK	skin
8	chr4:85512000-85517200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:85512000-85531000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:85514200-85517800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:85514600-85516400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:85514600-85517200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:85514800-85517600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:85514800-85519000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:85514800-85520000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:85515000-85516200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr4:85515400-85517600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:85515400-85518000	Weak transcription	Stomach Mucosa	stomach
19	chr4:85515400-85544400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:85515600-85517600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:85515800-85517200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:85515800-85530600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:85516000-85520400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links