Variant report

Variant	rs73832317
Chromosome Location	chr4:99398177-99398178
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10001137	1.00[EUR][1000 genomes]
rs10003061	1.00[EUR][1000 genomes]
rs10003496	1.00[EUR][1000 genomes]
rs10006734	1.00[EUR][1000 genomes]
rs10010260	1.00[EUR][1000 genomes]
rs10013248	1.00[EUR][1000 genomes]
rs10015953	1.00[EUR][1000 genomes]
rs10017075	1.00[EUR][1000 genomes]
rs10022073	1.00[EUR][1000 genomes]
rs10025311	1.00[EUR][1000 genomes]
rs10026222	1.00[EUR][1000 genomes]
rs10027925	1.00[EUR][1000 genomes]
rs10029895	1.00[EUR][1000 genomes]
rs10032785	1.00[EUR][1000 genomes]
rs10034649	1.00[EUR][1000 genomes]
rs10050289	1.00[EUR][1000 genomes]
rs10212883	1.00[EUR][1000 genomes]
rs1024127	1.00[EUR][1000 genomes]
rs10470953	1.00[EUR][1000 genomes]
rs12331722	1.00[EUR][1000 genomes]
rs16996571	1.00[EUR][1000 genomes]
rs17027393	1.00[EUR][1000 genomes]
rs17027526	1.00[EUR][1000 genomes]
rs17027538	1.00[EUR][1000 genomes]
rs17027559	1.00[EUR][1000 genomes]
rs17027596	1.00[EUR][1000 genomes]
rs17027597	1.00[EUR][1000 genomes]
rs17027617	1.00[EUR][1000 genomes]
rs28373747	1.00[EUR][1000 genomes]
rs28374939	1.00[EUR][1000 genomes]
rs28407050	1.00[EUR][1000 genomes]
rs28438716	1.00[EUR][1000 genomes]
rs28446845	1.00[EUR][1000 genomes]
rs28451188	1.00[EUR][1000 genomes]
rs28455818	1.00[EUR][1000 genomes]
rs28459325	1.00[EUR][1000 genomes]
rs28464398	1.00[EUR][1000 genomes]
rs28472340	1.00[EUR][1000 genomes]
rs28494643	1.00[EUR][1000 genomes]
rs28503871	1.00[EUR][1000 genomes]
rs28529663	1.00[EUR][1000 genomes]
rs28558542	1.00[EUR][1000 genomes]
rs28564255	1.00[EUR][1000 genomes]
rs28589745	1.00[EUR][1000 genomes]
rs28649922	1.00[EUR][1000 genomes]
rs28664868	1.00[EUR][1000 genomes]
rs28786730	1.00[EUR][1000 genomes]
rs28806635	1.00[EUR][1000 genomes]
rs28807427	1.00[EUR][1000 genomes]
rs28840158	1.00[EUR][1000 genomes]
rs28882140	1.00[EUR][1000 genomes]
rs28883979	1.00[EUR][1000 genomes]
rs28893208	1.00[EUR][1000 genomes]
rs41275691	1.00[EUR][1000 genomes]
rs41275693	1.00[EUR][1000 genomes]
rs41525749	1.00[EUR][1000 genomes]
rs56805018	1.00[EUR][1000 genomes]
rs60544326	1.00[EUR][1000 genomes]
rs6831386	1.00[EUR][1000 genomes]
rs6834495	1.00[EUR][1000 genomes]
rs73834403	1.00[EUR][1000 genomes]
rs73834404	1.00[EUR][1000 genomes]
rs73834429	1.00[EUR][1000 genomes]
rs73834444	1.00[EUR][1000 genomes]
rs73834475	1.00[EUR][1000 genomes]
rs73834479	1.00[EUR][1000 genomes]
rs73834489	1.00[EUR][1000 genomes]
rs7656868	1.00[EUR][1000 genomes]
rs7658383	1.00[EUR][1000 genomes]
rs9307226	1.00[EUR][1000 genomes]
rs9991668	1.00[EUR][1000 genomes]
rs9995184	1.00[EUR][1000 genomes]
rs9997337	1.00[EUR][1000 genomes]
rs9997973	1.00[EUR][1000 genomes]
rs9998801	1.00[EUR][1000 genomes]
rs9999779	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99389200-99398200	Weak transcription	Aorta	Aorta
2	chr4:99389200-99403600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:99389200-99404000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:99389200-99404000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:99389200-99404000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:99389200-99404200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:99389200-99407000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:99389200-99413000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:99389400-99399600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:99389400-99401800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:99389400-99402800	Weak transcription	A549	lung
12	chr4:99389400-99403000	Weak transcription	Fetal Kidney	kidney
13	chr4:99389400-99403200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:99389400-99403800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:99389400-99419800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr4:99390000-99398200	Weak transcription	Esophagus	oesophagus
17	chr4:99390000-99400000	Weak transcription	Fetal Intestine Large	intestine
18	chr4:99390000-99405000	Weak transcription	Fetal Intestine Small	intestine
19	chr4:99390200-99398400	Weak transcription	Lung	lung
20	chr4:99390200-99399400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:99390200-99402000	Weak transcription	Pancreas	Pancrea
22	chr4:99390200-99402200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:99390200-99402400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:99390200-99404000	Weak transcription	Spleen	Spleen
25	chr4:99390200-99404200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr4:99390200-99405400	Weak transcription	Left Ventricle	heart
27	chr4:99390400-99400200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:99390800-99413200	Weak transcription	Brain Anterior Caudate	brain
29	chr4:99391000-99399800	Strong transcription	Fetal Brain Female	brain
30	chr4:99391200-99400200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:99391400-99401800	Weak transcription	Fetal Heart	heart
32	chr4:99391600-99400400	Strong transcription	Fetal Stomach	stomach
33	chr4:99391800-99399600	Weak transcription	Stomach Mucosa	stomach
34	chr4:99391800-99401800	Weak transcription	Gastric	stomach
35	chr4:99392000-99404600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:99392200-99402400	Weak transcription	HSMMtube	muscle
37	chr4:99392200-99402800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:99392600-99398800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:99392600-99403600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr4:99392600-99408600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr4:99392600-99411800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:99393000-99398800	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr4:99393600-99398200	Weak transcription	Placenta	Placenta
44	chr4:99393800-99399000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:99393800-99399400	Weak transcription	Ovary	ovary
46	chr4:99394000-99403200	Weak transcription	HUVEC	blood vessel
47	chr4:99394000-99413200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr4:99394200-99398400	Weak transcription	Thymus	Thymus
49	chr4:99394200-99403200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:99394400-99399400	Weak transcription	Brain Inferior Temporal Lobe	brain

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