Variant report

Variant	rs73832793
Chromosome Location	chr3:50085786-50085787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12107488	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17050910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34174971	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6786780	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832787	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835204	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835205	0.83[AFR][1000 genomes]
rs73835206	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876767	chr3:49918751-50153356	Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv460527	chr3:50028385-50153356	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv590249	chr3:50028385-50153356	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50010800-50087000	Weak transcription	NHLF	lung
2	chr3:50011000-50091600	Weak transcription	Colonic Mucosa	Colon
3	chr3:50015200-50092000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:50037200-50087000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:50038600-50087400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:50041400-50095200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:50041600-50093400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:50046800-50085800	Weak transcription	HMEC	breast
9	chr3:50047200-50092600	Weak transcription	Gastric	stomach
10	chr3:50051600-50095200	Weak transcription	Pancreas	Pancrea
11	chr3:50052200-50087000	Weak transcription	NHDF-Ad	bronchial
12	chr3:50056400-50114400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:50062000-50091400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:50062200-50093400	Weak transcription	Small Intestine	intestine
15	chr3:50066600-50086800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:50066800-50087400	Weak transcription	NH-A	brain
17	chr3:50071800-50087600	Weak transcription	HSMMtube	muscle
18	chr3:50072800-50095200	Weak transcription	Fetal Heart	heart
19	chr3:50078400-50102400	Weak transcription	Psoas Muscle	Psoas
20	chr3:50078800-50092000	Weak transcription	Ovary	ovary
21	chr3:50079000-50085800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:50079200-50087400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr3:50079200-50095200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:50079200-50095200	Weak transcription	K562	blood
25	chr3:50081600-50089800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:50082000-50086400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr3:50082000-50113600	Strong transcription	Primary T cells from cord blood	blood
28	chr3:50082000-50115600	Strong transcription	Fetal Intestine Large	intestine
29	chr3:50082200-50087000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:50082200-50112000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr3:50082200-50116000	Strong transcription	Fetal Muscle Leg	muscle
32	chr3:50082400-50113400	Strong transcription	Primary B cells from cord blood	blood
33	chr3:50082400-50115800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr3:50082400-50116200	Strong transcription	Fetal Thymus	thymus
35	chr3:50082600-50116200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:50083400-50113200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:50083800-50098000	Strong transcription	Fetal Intestine Small	intestine
38	chr3:50083800-50111600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr3:50084000-50085800	Strong transcription	Brain Germinal Matrix	brain
40	chr3:50084000-50087400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:50084000-50087600	Strong transcription	Thymus	Thymus
42	chr3:50084000-50090200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:50084000-50093200	Strong transcription	Fetal Stomach	stomach
44	chr3:50084000-50105200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:50084000-50113400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr3:50084000-50114800	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr3:50084000-50114800	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr3:50084200-50086200	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr3:50084200-50086200	Strong transcription	Osteobl	bone
50	chr3:50084200-50086400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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