Variant report

Variant	rs73833527
Chromosome Location	chr3:49241083-49241084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58625868	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61370152	1.00[AMR][1000 genomes]
rs7650868	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876764	chr3:49040462-49245645	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
2	nsv834686	chr3:49106047-49270556	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv1008750	chr3:49208815-49362401	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49237600-49255600	Weak transcription	Left Ventricle	heart
2	chr3:49237800-49242400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:49237800-49248400	Weak transcription	Fetal Stomach	stomach
4	chr3:49237800-49251000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:49237800-49251200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:49238200-49242800	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:49238200-49245600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:49238200-49248600	Weak transcription	Osteobl	bone
9	chr3:49238200-49249800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:49238200-49251000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:49238200-49251000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:49238200-49251000	Weak transcription	NHLF	lung
13	chr3:49238200-49255400	Weak transcription	Right Ventricle	heart
14	chr3:49238400-49241200	Weak transcription	Fetal Heart	heart
15	chr3:49239200-49245400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:49239400-49251000	Weak transcription	Ovary	ovary
17	chr3:49240200-49241600	Enhancers	Adipose Nuclei	Adipose
18	chr3:49240400-49241800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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