Variant report

Variant	rs73833644
Chromosome Location	chr3:46887038-46887039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46882754..46884665-chr3:46886091..46888357,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2233264	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57913184	0.87[ASN][1000 genomes]
rs60544005	0.86[ASN][1000 genomes]
rs73833645	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007449	chr3:46652343-46986578	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv536554	chr3:46652343-46986578	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv2757869	chr3:46680452-46972489	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv2759147	chr3:46680452-46972489	Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv536558	chr3:46706571-47024756	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv915922	chr3:46768104-47009805	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv590204	chr3:46852679-46901654	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv590205	chr3:46852679-46929546	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv1003979	chr3:46853374-46943854	Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv590206	chr3:46873957-46935527	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv876752	chr3:46879831-46967040	Bivalent/Poised TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv876753	chr3:46884552-46957298	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv876754	chr3:46884552-46967040	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46886000-46887200	Enhancers	Lung	lung
2	chr3:46886000-46887800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr3:46886400-46887800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:46886400-46888200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:46886600-46887200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr3:46886600-46887200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:46886600-46887200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:46886600-46887200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr3:46886600-46887200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr3:46886600-46887200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:46886600-46887200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:46886600-46887200	Flanking Active TSS	Liver	Liver
13	chr3:46886600-46887200	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr3:46886600-46887200	Flanking Active TSS	Fetal Lung	lung
15	chr3:46886600-46887400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
16	chr3:46886600-46887400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:46886600-46887400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:46886600-46887400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr3:46886600-46887400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:46886600-46887400	Flanking Active TSS	Fetal Intestine Small	intestine
21	chr3:46886600-46887400	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr3:46886600-46887400	Flanking Active TSS	Thymus	Thymus
23	chr3:46886600-46887600	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr3:46886600-46887800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:46886600-46887800	Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr3:46886600-46887800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:46886600-46888000	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr3:46886600-46888000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:46886600-46888000	Active TSS	Aorta	Aorta
30	chr3:46886600-46888000	Active TSS	Brain Angular Gyrus	brain
31	chr3:46886600-46888000	Active TSS	Brain Anterior Caudate	brain
32	chr3:46886600-46888000	Flanking Active TSS	Fetal Thymus	thymus
33	chr3:46886600-46888000	Active TSS	Ovary	ovary
34	chr3:46886600-46888200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:46886600-46888200	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr3:46886600-46888200	Enhancers	Fetal Heart	heart
37	chr3:46886600-46888200	Active TSS	Fetal Kidney	kidney
38	chr3:46886600-46888400	Enhancers	Fetal Brain Male	brain
39	chr3:46886800-46887200	Flanking Active TSS	Primary B cells from peripheral blood	blood
40	chr3:46886800-46887200	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr3:46886800-46887200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr3:46886800-46887200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr3:46886800-46887200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr3:46886800-46887200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:46886800-46887200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
46	chr3:46886800-46887200	Enhancers	Gastric	stomach
47	chr3:46886800-46887200	Enhancers	Spleen	Spleen
48	chr3:46886800-46887400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr3:46886800-46887400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:46886800-46887400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood

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