Variant report

Variant	rs73833994
Chromosome Location	chr4:86954106-86954107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73833995	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73833997	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73833998	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
3	chr4:86936400-86954600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:86938200-86954200	Weak transcription	Fetal Kidney	kidney
6	chr4:86938600-86957800	Weak transcription	Fetal Brain Female	brain
7	chr4:86944600-86954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:86944600-86963000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:86945400-86963200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:86948200-86966600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:86950600-86959200	Weak transcription	Fetal Brain Male	brain
13	chr4:86950600-86967000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:86952200-86956000	Weak transcription	Spleen	Spleen
15	chr4:86952600-86956400	Enhancers	Fetal Heart	heart
16	chr4:86953000-86956200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr4:86953200-86954600	Enhancers	Placenta	Placenta
18	chr4:86953200-86954800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:86953200-86955200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:86953200-86955200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr4:86953200-86957000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:86953400-86954600	Enhancers	Left Ventricle	heart
23	chr4:86953400-86954800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:86953400-86955000	Enhancers	Hela-S3	cervix
25	chr4:86953400-86955000	Enhancers	NHLF	lung
26	chr4:86953400-86955200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:86953400-86955200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:86953400-86955200	Enhancers	Aorta	Aorta
29	chr4:86953400-86955200	Enhancers	Brain Hippocampus Middle	brain
30	chr4:86953400-86955200	Enhancers	Fetal Muscle Leg	muscle
31	chr4:86953600-86954800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:86953600-86954800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr4:86953600-86954800	Enhancers	Placenta Amnion	Placenta Amnion
34	chr4:86953600-86955000	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr4:86953600-86955200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:86953600-86955200	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr4:86953600-86955200	Enhancers	Brain Angular Gyrus	brain
38	chr4:86953600-86955200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:86953600-86955400	Enhancers	Colon Smooth Muscle	Colon
40	chr4:86953600-86956200	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr4:86953800-86954200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr4:86953800-86954200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:86953800-86954200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr4:86953800-86954400	Flanking Active TSS	NHDF-Ad	bronchial
45	chr4:86953800-86954600	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr4:86953800-86954600	Enhancers	Lung	lung
47	chr4:86953800-86954600	Enhancers	Rectal Smooth Muscle	rectum
48	chr4:86953800-86954800	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr4:86953800-86954800	Enhancers	Fetal Lung	lung
50	chr4:86953800-86955000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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