Variant report

Variant	rs73834466
Chromosome Location	chr4:99312352-99312353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55634286	1.00[AFR][1000 genomes]
rs56813590	1.00[AFR][1000 genomes]
rs57012386	1.00[AFR][1000 genomes]
rs57678573	1.00[AFR][1000 genomes]
rs57911361	1.00[AFR][1000 genomes]
rs59911323	1.00[AFR][1000 genomes]
rs60148186	1.00[AFR][1000 genomes]
rs60218968	1.00[AFR][1000 genomes]
rs60502057	1.00[AFR][1000 genomes]
rs60883587	1.00[AFR][1000 genomes]
rs60969041	1.00[AFR][1000 genomes]
rs73834432	1.00[AFR][1000 genomes]
rs73834433	1.00[AFR][1000 genomes]
rs73834440	1.00[AFR][1000 genomes]
rs73834441	1.00[AFR][1000 genomes]
rs73834442	1.00[AFR][1000 genomes]
rs73834446	1.00[AFR][1000 genomes]
rs73834447	1.00[AFR][1000 genomes]
rs73834448	1.00[AFR][1000 genomes]
rs73834449	1.00[AFR][1000 genomes]
rs73834451	1.00[AFR][1000 genomes]
rs73834457	1.00[AFR][1000 genomes]
rs73834458	1.00[AFR][1000 genomes]
rs73834459	1.00[AFR][1000 genomes]
rs73834460	1.00[AFR][1000 genomes]
rs73834462	1.00[AFR][1000 genomes]
rs73834463	1.00[AFR][1000 genomes]
rs73834464	1.00[AFR][1000 genomes]
rs73834465	1.00[AFR][1000 genomes]
rs73834469	1.00[AFR][1000 genomes]
rs73834472	1.00[AFR][1000 genomes]
rs73834473	1.00[AFR][1000 genomes]
rs73834477	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1010207	chr4:99291295-99312807	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99215000-99317000	Weak transcription	Left Ventricle	heart
2	chr4:99262800-99333400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:99264200-99338200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:99271600-99314800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:99285000-99337800	Weak transcription	HUVEC	blood vessel
6	chr4:99288400-99342400	Weak transcription	A549	lung
7	chr4:99288600-99313000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:99288800-99319800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:99288800-99329200	Weak transcription	Esophagus	oesophagus
10	chr4:99288800-99332000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:99288800-99333600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:99289000-99313600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:99289000-99314600	Weak transcription	Lung	lung
14	chr4:99289000-99318400	Weak transcription	Ovary	ovary
15	chr4:99289000-99333000	Weak transcription	Fetal Intestine Large	intestine
16	chr4:99289000-99333400	Weak transcription	Pancreas	Pancrea
17	chr4:99289000-99333600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:99289400-99316800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:99289400-99321000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:99290600-99312800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr4:99290600-99333600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr4:99290600-99337800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:99290600-99346000	Weak transcription	Fetal Lung	lung
24	chr4:99290800-99313000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:99290800-99315200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:99290800-99316600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:99290800-99317200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:99291200-99317000	Weak transcription	Adipose Nuclei	Adipose
29	chr4:99291600-99314600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:99292800-99313600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr4:99294200-99317000	Weak transcription	Aorta	Aorta
32	chr4:99294800-99333400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:99295000-99315400	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr4:99295400-99316600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:99296000-99333600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:99296400-99313000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:99298600-99318400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr4:99299000-99315200	Weak transcription	HSMMtube	muscle
39	chr4:99299400-99350800	Weak transcription	NHLF	lung
40	chr4:99299600-99338200	Weak transcription	NHDF-Ad	bronchial
41	chr4:99299800-99313000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr4:99299800-99315400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:99300000-99314000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:99301200-99315200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:99301600-99332000	Weak transcription	Liver	Liver
46	chr4:99301800-99328600	Weak transcription	Fetal Thymus	thymus
47	chr4:99303200-99333400	Weak transcription	Fetal Muscle Leg	muscle
48	chr4:99304800-99313400	Weak transcription	Primary B cells from cord blood	blood
49	chr4:99306600-99312400	Weak transcription	Hela-S3	cervix
50	chr4:99307000-99333600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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