Variant report

Variant	rs73835235
Chromosome Location	chr3:50396985-50396986
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:50383426..50385588-chr3:50395187..50397188,2	MCF-7	breast:
2	chr3:50394476..50397336-chr3:50402508..50404980,5	MCF-7	breast:
3	chr3:50358941..50361701-chr3:50396606..50398793,2	MCF-7	breast:
4	chr3:50373336..50376121-chr3:50395555..50398512,4	K562	blood:
5	chr3:50374257..50376540-chr3:50394477..50397107,2	MCF-7	breast:
6	chr3:50394146..50396994-chr3:50606998..50609600,2	MCF-7	breast:
7	chr3:50386112..50390194-chr3:50392847..50399521,11	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYB561D2-2	chr3:50396941-50400230	NONHSAT089837

No data

Variant related genes	Relation type
ENSG00000114735	Chromatin interaction
ENSG00000007402	Chromatin interaction
ENSG00000088543	Chromatin interaction
ENSG00000114395	Chromatin interaction
ENSG00000068028	Chromatin interaction
ENSG00000004838	Chromatin interaction
ENSG00000114388	Chromatin interaction
ENSG00000272104	Chromatin interaction
ENSG00000068001	Chromatin interaction
ENSG00000271858	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12107362	1.00[AMR][1000 genomes]
rs12107386	1.00[AMR][1000 genomes]
rs17050921	1.00[AMR][1000 genomes]
rs17050924	1.00[AMR][1000 genomes]
rs17849464	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2229648	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2233477	1.00[AMR][1000 genomes]
rs55913179	1.00[AMR][1000 genomes]
rs58418366	1.00[AMR][1000 genomes]
rs59822920	1.00[AMR][1000 genomes]
rs73832800	1.00[AMR][1000 genomes]
rs73832801	1.00[AMR][1000 genomes]
rs73833385	1.00[AMR][1000 genomes]
rs73835208	1.00[AMR][1000 genomes]
rs73835216	1.00[AMR][1000 genomes]
rs73835217	1.00[AMR][1000 genomes]
rs73835504	1.00[AMR][1000 genomes]
rs73835507	1.00[AMR][1000 genomes]
rs73835518	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523662	chr3:50144951-50584999	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv876769	chr3:50155468-50408398	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	esv1793751	chr3:50157364-50476363	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
5	esv1828162	chr3:50157364-50506151	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
6	nsv470561	chr3:50158774-50584999	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
7	nsv876770	chr3:50158774-50609624	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
8	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
9	nsv460531	chr3:50247824-50436827	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
10	nsv590255	chr3:50247824-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
11	nsv876772	chr3:50255305-50436827	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
12	nsv590256	chr3:50302830-50420554	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
13	nsv876774	chr3:50302830-50436827	Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
14	nsv876773	chr3:50302830-50480131	Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
15	nsv834693	chr3:50302830-50507964	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
16	nsv876775	chr3:50324672-50504896	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
17	esv3584502	chr3:50368278-50659741	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
18	nsv432419	chr3:50388396-50637496	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50392400-50397200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:50393400-50397600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr3:50394000-50397000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
4	chr3:50394800-50397000	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr3:50394800-50397400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:50395200-50397200	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr3:50395600-50397000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:50395600-50397200	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr3:50395600-50397200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr3:50395600-50397200	Active TSS	K562	blood
11	chr3:50395600-50397400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
12	chr3:50395600-50397400	Active TSS	HSMMtube	muscle
13	chr3:50395600-50397400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr3:50395600-50397600	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr3:50395800-50397000	Active TSS	Aorta	Aorta
16	chr3:50395800-50397200	Active TSS	Fetal Kidney	kidney
17	chr3:50395800-50397200	Active TSS	NHDF-Ad	bronchial
18	chr3:50395800-50397400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
19	chr3:50395800-50397400	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr3:50395800-50397400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr3:50395800-50397400	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr3:50395800-50397600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr3:50395800-50397600	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr3:50395800-50397600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:50395800-50397600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:50395800-50397600	Active TSS	HSMM	muscle
27	chr3:50396000-50397000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:50396000-50397200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:50396000-50397200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:50396000-50397200	Active TSS	Muscle Satellite Cultured Cells	--
31	chr3:50396000-50397200	Active TSS	Small Intestine	intestine
32	chr3:50396000-50397200	Active TSS	A549	lung
33	chr3:50396000-50397600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:50396000-50397600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:50396000-50397600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:50396000-50397800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr3:50396200-50397000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:50396200-50397000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
39	chr3:50396200-50397000	Active TSS	Fetal Heart	heart
40	chr3:50396200-50397000	Active TSS	Lung	lung
41	chr3:50396200-50397000	Active TSS	Ovary	ovary
42	chr3:50396200-50397000	Active TSS	Stomach Mucosa	stomach
43	chr3:50396200-50397200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:50396200-50397200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:50396200-50397200	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr3:50396200-50397200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:50396200-50397200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr3:50396200-50397200	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr3:50396200-50397200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:50396200-50397200	Active TSS	Brain Cingulate Gyrus	brain

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