Variant report

Variant	rs73835327
Chromosome Location	chr4:104344880-104344881
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11943159	0.83[AMR][1000 genomes]
rs11945097	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56228681	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57200348	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57279493	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835312	0.83[AMR][1000 genomes]
rs73835314	0.83[AMR][1000 genomes]
rs73835330	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015023	chr4:104039145-104565217	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3348747	chr4:104214627-104609795	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv879687	chr4:104288620-104371785	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830023	chr4:104333042-104522801	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv980510	chr4:104339939-104350198	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:104344200-104345400	Flanking Active TSS	Liver	Liver
2	chr4:104344200-104347000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:104344400-104346000	Weak transcription	HMEC	breast
4	chr4:104344600-104345000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr4:104344600-104345000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:104344600-104345000	Enhancers	Pancreas	Pancrea
7	chr4:104344600-104345200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:104344600-104345800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:104344600-104346000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:104344800-104345000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:104344800-104345000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:104344800-104346000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:104344800-104346000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr4:104344800-104349000	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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