Variant report

Variant	rs73835766
Chromosome Location	chr3:52290285-52290286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:52289327..52293774-chr3:52294215..52297996,5	MCF-7	breast:
2	chr3:52286492..52290913-chr3:52310452..52313639,5	K562	blood:
3	chr3:52286679..52290007-chr3:52290235..52292692,3	K562	blood:

Variant related genes	Relation type
ENSG00000164091	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3890123	1.00[AMR][1000 genomes]
rs56898787	1.00[AMR][1000 genomes]
rs58781613	1.00[AMR][1000 genomes]
rs60499166	1.00[AMR][1000 genomes]
rs60997031	1.00[AMR][1000 genomes]
rs61734628	1.00[AMR][1000 genomes]
rs6766038	1.00[AMR][1000 genomes]
rs73837049	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837599	1.00[AMR][1000 genomes]
rs73838354	1.00[AMR][1000 genomes]
rs7641255	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519445	chr3:52004317-52367932	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv470572	chr3:52123313-52350212	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	103 gene(s)	inside rSNPs	diseases
3	nsv460537	chr3:52148233-52290550	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv590301	chr3:52148233-52290550	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	nsv508218	chr3:52155869-52290410	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	nsv834694	chr3:52178983-52335821	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
7	nsv834695	chr3:52199701-52400577	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	98 gene(s)	inside rSNPs	diseases
8	nsv876787	chr3:52236762-52367932	Genic enhancers Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	90 gene(s)	inside rSNPs	diseases
9	nsv876788	chr3:52247110-52367932	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	90 gene(s)	inside rSNPs	diseases
10	nsv876789	chr3:52247110-52575831	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
11	nsv984542	chr3:52285682-52516115	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
12	nsv963320	chr3:52290168-52291494	Strong transcription Genic enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52280400-52291200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:52280600-52290800	Weak transcription	Psoas Muscle	Psoas
3	chr3:52280600-52292400	Weak transcription	Fetal Heart	heart
4	chr3:52280800-52292600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:52281000-52291800	Strong transcription	Fetal Intestine Small	intestine
6	chr3:52281800-52303400	Weak transcription	Right Atrium	heart
7	chr3:52282000-52298800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:52282000-52299400	Strong transcription	Liver	Liver
9	chr3:52282200-52293200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:52282200-52303000	Strong transcription	Fetal Lung	lung
11	chr3:52282200-52310000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:52282400-52297200	Strong transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:52282400-52309600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:52282600-52304000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:52282600-52308200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:52282800-52303800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:52282800-52305000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:52283000-52306000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:52283200-52308400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:52283400-52304600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:52283400-52305400	Strong transcription	Brain Germinal Matrix	brain
22	chr3:52283600-52308800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr3:52283800-52309600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:52284400-52291800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:52284400-52304800	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:52284600-52293000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:52284600-52305800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr3:52284800-52300200	Strong transcription	Pancreas	Pancrea
29	chr3:52285000-52302600	Strong transcription	A549	lung
30	chr3:52285200-52291000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:52285600-52292800	Strong transcription	NH-A	brain
32	chr3:52285600-52308400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:52285800-52307400	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr3:52286000-52298200	Strong transcription	Gastric	stomach
35	chr3:52286000-52302200	Strong transcription	Left Ventricle	heart
36	chr3:52286400-52306800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr3:52286600-52293400	Strong transcription	NHDF-Ad	bronchial
38	chr3:52286600-52303400	Strong transcription	NHLF	lung
39	chr3:52287000-52293400	Strong transcription	HSMMtube	muscle
40	chr3:52287200-52294000	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr3:52287200-52296800	Strong transcription	Right Ventricle	heart
42	chr3:52287400-52291000	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr3:52287400-52295200	Strong transcription	Aorta	Aorta
44	chr3:52287400-52305400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:52287400-52305600	Strong transcription	HepG2	liver
46	chr3:52287600-52293600	Strong transcription	HMEC	breast
47	chr3:52287800-52294600	Strong transcription	Small Intestine	intestine
48	chr3:52287800-52302200	Strong transcription	Lung	lung
49	chr3:52288000-52291400	Genic enhancers	Fetal Thymus	thymus
50	chr3:52288000-52292400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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