Variant report

Variant	rs73836051
Chromosome Location	chr4:106112261-106112262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106064096..106067013-chr4:106110754..106112380,2	MCF-7	breast:
2	chr4:106111372..106113018-chr4:106117335..106120192,2	MCF-7	breast:
3	chr4:106074267..106075814-chr4:106111542..106113452,2	MCF-7	breast:
4	chr4:106112171..106113904-chr4:106125859..106128359,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73836090	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106069400-106114200	Weak transcription	Esophagus	oesophagus
2	chr4:106078000-106112800	Weak transcription	Fetal Kidney	kidney
3	chr4:106084800-106127400	Weak transcription	Brain Germinal Matrix	brain
4	chr4:106085600-106112800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:106093800-106112400	Weak transcription	Primary B cells from cord blood	blood
6	chr4:106094000-106112600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr4:106098200-106113200	Weak transcription	Fetal Stomach	stomach
8	chr4:106099000-106114200	Weak transcription	Gastric	stomach
9	chr4:106101000-106146600	Weak transcription	Spleen	Spleen
10	chr4:106101200-106112600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:106101200-106112800	Weak transcription	NHDF-Ad	bronchial
12	chr4:106101600-106112800	Weak transcription	HSMM	muscle
13	chr4:106102600-106112800	Weak transcription	HSMMtube	muscle
14	chr4:106102600-106113400	Weak transcription	K562	blood
15	chr4:106102800-106127400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:106104800-106117400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:106105200-106117800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:106106000-106112800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:106106000-106135000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:106106200-106112400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:106106200-106112600	Weak transcription	Brain Anterior Caudate	brain
22	chr4:106106200-106112600	Weak transcription	Fetal Lung	lung
23	chr4:106106200-106112800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:106106200-106112800	Weak transcription	Brain Substantia Nigra	brain
25	chr4:106106200-106112800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:106106200-106114000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:106106200-106114200	Weak transcription	Small Intestine	intestine
28	chr4:106106200-106118600	Weak transcription	Thymus	Thymus
29	chr4:106106200-106155000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr4:106106400-106112800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:106106600-106112600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr4:106106600-106125800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr4:106108000-106112800	Weak transcription	Ovary	ovary
34	chr4:106108000-106115400	Weak transcription	HMEC	breast
35	chr4:106108000-106123000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:106108200-106112800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:106108200-106112800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr4:106108400-106112400	Weak transcription	Osteobl	bone
39	chr4:106108400-106112600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:106108400-106112600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr4:106108400-106112600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr4:106108400-106112600	Weak transcription	NH-A	brain
43	chr4:106108400-106112800	Weak transcription	HUVEC	blood vessel
44	chr4:106108400-106113000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:106108400-106113200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:106108400-106114200	Weak transcription	Pancreas	Pancrea
47	chr4:106108600-106112800	Weak transcription	NHEK	skin
48	chr4:106108600-106113000	Weak transcription	Stomach Mucosa	stomach
49	chr4:106109000-106112600	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr4:106109400-106112400	Weak transcription	Fetal Heart	heart

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