Variant report

Variant	rs73836183
Chromosome Location	chr4:95813451-95813452
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95667841..95668506-chr4:95813087..95813807,2	MCF-7	breast:
2	chr4:95810479..95814160-chr4:95814675..95817418,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11932204	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11932515	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11932610	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11936523	0.92[EUR][1000 genomes]
rs11941775	1.00[EUR][1000 genomes]
rs11943147	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022361	1.00[EUR][1000 genomes]
rs17022438	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022440	0.92[EUR][1000 genomes]
rs17022443	0.92[EUR][1000 genomes]
rs17022451	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022456	0.92[EUR][1000 genomes]
rs17022474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022484	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17022491	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022496	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17022509	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022514	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022528	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022567	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2865408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56353739	0.92[EUR][1000 genomes]
rs57560594	0.92[EUR][1000 genomes]
rs58414599	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58554231	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6828737	0.92[EUR][1000 genomes]
rs6829384	0.92[EUR][1000 genomes]
rs6851515	0.92[EUR][1000 genomes]
rs6851550	0.92[EUR][1000 genomes]
rs6851705	0.92[EUR][1000 genomes]
rs72887844	0.92[EUR][1000 genomes]
rs72887846	0.92[EUR][1000 genomes]
rs73836127	0.92[EUR][1000 genomes]
rs73836128	1.00[EUR][1000 genomes]
rs73836142	1.00[EUR][1000 genomes]
rs73836153	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73836154	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73836181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836191	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836195	0.88[AFR][1000 genomes]
rs7669132	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669913	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95810400-95813600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:95811000-95833600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:95811200-95815200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:95811200-95815400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:95811200-95817800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:95811200-95824800	Weak transcription	Aorta	Aorta
7	chr4:95811400-95814000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:95811400-95815200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:95811600-95818200	Weak transcription	NH-A	brain
10	chr4:95812000-95821400	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:95812400-95830400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:95813200-95818000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:95813400-95813800	Weak transcription	A549	lung
14	chr4:95813400-95813800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links