Variant report
| Variant | rs73836270 |
|---|---|
| Chromosome Location | chr4:106398874-106398875 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:106397655..106400410-chr4:106400778..106402535,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PPA2 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs56205774 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57937565 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58230582 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59912746 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60321631 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73836260 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73836262 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73836263 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73836265 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73836266 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73836275 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73836276 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73836278 | 1.00[AMR][1000 genomes] |
| rs73836281 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879699 | chr4:106212562-106698892 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv830027 | chr4:106222010-106406738 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 3 | nsv1002228 | chr4:106346206-106433381 | ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
