Variant report

Variant	rs73837044
Chromosome Location	chr4:106522803-106522804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11931966	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11933060	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11933130	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11936257	1.00[AMR][1000 genomes]
rs11936307	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11936813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11940576	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944125	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11945534	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11946460	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58559365	1.00[AMR][1000 genomes]
rs61082957	1.00[AMR][1000 genomes]
rs73837037	1.00[AMR][1000 genomes]
rs73837048	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837064	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837065	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837067	1.00[AMR][1000 genomes]
rs73837070	1.00[AMR][1000 genomes]
rs73837073	1.00[AMR][1000 genomes]
rs73837075	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837078	1.00[AMR][1000 genomes]
rs73837083	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106516400-106545600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106518200-106524400	Weak transcription	Lung	lung
5	chr4:106518200-106524400	Weak transcription	Pancreas	Pancrea
6	chr4:106520200-106526400	Weak transcription	NHEK	skin
7	chr4:106520400-106523600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:106520800-106523600	Weak transcription	Fetal Intestine Large	intestine
9	chr4:106521200-106523400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:106521200-106526800	Weak transcription	Stomach Mucosa	stomach
11	chr4:106521400-106526800	Weak transcription	Fetal Intestine Small	intestine
12	chr4:106521600-106526600	Weak transcription	Fetal Heart	heart
13	chr4:106521800-106526400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:106521800-106545600	Weak transcription	Right Atrium	heart
15	chr4:106522800-106523200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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