Variant report

Variant	rs73838338
Chromosome Location	chr3:69337161-69337162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7651515	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1012483	chr3:69321191-69340525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69293000-69343400	Weak transcription	HSMM	muscle
2	chr3:69293400-69339200	Weak transcription	Aorta	Aorta
3	chr3:69310000-69337600	Weak transcription	Placenta	Placenta
4	chr3:69310200-69337200	Weak transcription	Lung	lung
5	chr3:69323000-69339200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:69326200-69337800	Weak transcription	Right Atrium	heart
7	chr3:69327400-69337200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:69327600-69343200	Weak transcription	Fetal Stomach	stomach
9	chr3:69328200-69337400	Weak transcription	Thymus	Thymus
10	chr3:69328600-69339200	Weak transcription	Esophagus	oesophagus
11	chr3:69329000-69337400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:69329400-69337400	Weak transcription	Spleen	Spleen
13	chr3:69330400-69343200	Weak transcription	Fetal Thymus	thymus
14	chr3:69331400-69337400	Weak transcription	Fetal Brain Female	brain
15	chr3:69331400-69342200	Weak transcription	HSMMtube	muscle
16	chr3:69331600-69339400	Weak transcription	Left Ventricle	heart
17	chr3:69331600-69355400	Weak transcription	Adipose Nuclei	Adipose
18	chr3:69331800-69338200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:69332000-69337200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr3:69332400-69337200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr3:69332600-69337200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:69332600-69337200	Strong transcription	NHEK	skin
23	chr3:69333600-69337400	Weak transcription	Brain Anterior Caudate	brain
24	chr3:69333600-69337400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:69333600-69337800	Weak transcription	Brain Angular Gyrus	brain
26	chr3:69333800-69337400	Weak transcription	Brain Hippocampus Middle	brain
27	chr3:69333800-69337400	Weak transcription	Brain Substantia Nigra	brain
28	chr3:69333800-69337800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr3:69334200-69338400	Strong transcription	Primary hematopoietic stem cells	blood
30	chr3:69334600-69342800	Strong transcription	Dnd41	blood
31	chr3:69334800-69337600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr3:69334800-69340200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr3:69335400-69338000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:69335400-69338200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr3:69335400-69343800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:69335600-69337200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:69335600-69337400	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr3:69336200-69337400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:69336400-69337200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:69336400-69337200	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr3:69336400-69337400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr3:69336400-69337400	Strong transcription	HMEC	breast
43	chr3:69336400-69337600	Enhancers	H1 Cell Line	embryonic stem cell
44	chr3:69336400-69337600	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr3:69336400-69340400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr3:69336600-69337200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr3:69336600-69337200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr3:69336600-69337200	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr3:69336600-69337200	Weak transcription	HUVEC	blood vessel
50	chr3:69336600-69337400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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