Variant report

Variant	rs73838822
Chromosome Location	chr4:110535876-110535877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110353186..110356088-chr4:110535620..110537677,2	K562	blood:
2	chr4:110535854..110537402-chr4:110608353..110610613,2	K562	blood:

Variant related genes	Relation type
ENSG00000138802	Chromatin interaction
ENSG00000247950	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17040565	1.00[EUR][1000 genomes]
rs17040576	1.00[EUR][1000 genomes]
rs28451151	1.00[EUR][1000 genomes]
rs28461420	1.00[EUR][1000 genomes]
rs28538345	1.00[EUR][1000 genomes]
rs28661263	1.00[EUR][1000 genomes]
rs41277043	1.00[EUR][1000 genomes]
rs59195946	0.82[AFR][1000 genomes]
rs9991115	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv3419480	chr4:110521397-110549622	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110531000-110546000	Weak transcription	Esophagus	oesophagus
2	chr4:110531000-110550600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:110531400-110546000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:110531400-110546000	Weak transcription	Spleen	Spleen
5	chr4:110531600-110543800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr4:110531600-110543800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:110531600-110545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:110531600-110546000	Weak transcription	Thymus	Thymus
9	chr4:110531600-110549600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:110531800-110543800	Weak transcription	Fetal Thymus	thymus
11	chr4:110532000-110537600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:110532600-110537000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:110532600-110545800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:110532800-110546000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:110533000-110573000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr4:110533400-110552800	Weak transcription	Primary B cells from cord blood	blood
17	chr4:110533800-110537400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:110534400-110536000	Enhancers	Primary B cells from peripheral blood	blood
19	chr4:110534400-110536000	Enhancers	Dnd41	blood
20	chr4:110534400-110539600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr4:110534400-110539800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr4:110534600-110536400	Strong transcription	Primary T cells from cord blood	blood
23	chr4:110534600-110536400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr4:110534600-110536400	Enhancers	Liver	Liver
25	chr4:110534800-110547000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:110535000-110536200	Enhancers	HepG2	liver
27	chr4:110535400-110536000	Enhancers	Fetal Intestine Large	intestine
28	chr4:110535400-110537000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:110535600-110536200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr4:110535600-110537400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:110535800-110537000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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