Variant report

Variant	rs73838857
Chromosome Location	chr4:110584795-110584796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110582184..110585367-chr4:110588932..110592046,3	K562	blood:
2	chr4:110581396..110582917-chr4:110583378..110586264,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs5030605	1.00[AMR][1000 genomes]
rs73838853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv508303	chr4:110579305-110604452	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110571000-110605400	Weak transcription	Left Ventricle	heart
2	chr4:110572600-110623200	Weak transcription	Esophagus	oesophagus
3	chr4:110573200-110588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:110574000-110586600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:110574200-110587400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:110574200-110587600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:110574200-110592600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:110574200-110598400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:110574600-110584800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:110574800-110585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:110576600-110589200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:110576800-110585000	Weak transcription	Primary B cells from cord blood	blood
13	chr4:110577400-110587000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:110579200-110608400	Weak transcription	Ovary	ovary
15	chr4:110580000-110585000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr4:110580000-110587600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:110580200-110588200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr4:110580400-110586000	Strong transcription	Fetal Thymus	thymus
19	chr4:110580600-110585000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr4:110580600-110585400	Strong transcription	Thymus	Thymus
21	chr4:110580800-110585000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr4:110580800-110586200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr4:110581000-110586200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr4:110581200-110587000	Weak transcription	Placenta	Placenta
25	chr4:110581400-110587800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr4:110581600-110596800	Weak transcription	Lung	lung
27	chr4:110582800-110586000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:110582800-110586200	Enhancers	Brain Germinal Matrix	brain
29	chr4:110583000-110585800	Strong transcription	Primary T cells from cord blood	blood
30	chr4:110583000-110587000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:110583000-110587800	Enhancers	Fetal Brain Male	brain
32	chr4:110583000-110596600	Weak transcription	HepG2	liver
33	chr4:110583200-110585000	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr4:110583200-110585200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:110583200-110585400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr4:110583200-110585400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr4:110583200-110585800	Strong transcription	Dnd41	blood
38	chr4:110583400-110585000	Weak transcription	Adipose Nuclei	Adipose
39	chr4:110583400-110585200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr4:110583400-110586600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr4:110583600-110584800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:110583600-110585000	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr4:110583600-110585000	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr4:110583600-110585000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr4:110583600-110585200	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr4:110583600-110585200	Enhancers	Brain Anterior Caudate	brain
47	chr4:110583600-110586600	Weak transcription	Spleen	Spleen
48	chr4:110583600-110587000	Weak transcription	Fetal Brain Female	brain
49	chr4:110583600-110605600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr4:110584000-110584800	Enhancers	Brain Cingulate Gyrus	brain

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