Variant report

Variant	rs73839121
Chromosome Location	chr3:52679923-52679924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52674322..52677027-chr3:52678339..52680571,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17052329	0.84[AFR][1000 genomes]
rs17052401	1.00[AMR][1000 genomes]
rs55662247	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59277755	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6803509	1.00[AMR][1000 genomes]
rs73839167	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839179	1.00[AMR][1000 genomes]
rs73839182	1.00[AMR][1000 genomes]
rs73839183	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:52591000-52688000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:52634800-52686000	Strong transcription	Duodenum Mucosa	Duodenum
5	chr3:52636000-52703800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:52636000-52704000	Strong transcription	Placenta	Placenta
7	chr3:52636200-52703200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr3:52636800-52703600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr3:52637200-52715800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:52640800-52684600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:52642600-52711200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:52643400-52691200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:52643800-52682800	Weak transcription	K562	blood
14	chr3:52650000-52712200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:52655200-52716400	Strong transcription	Fetal Thymus	thymus
16	chr3:52655600-52680200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:52655600-52680200	Strong transcription	Fetal Muscle Leg	muscle
18	chr3:52655800-52684600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:52655800-52697600	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr3:52655800-52704000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:52656000-52683200	Strong transcription	Adipose Nuclei	Adipose
22	chr3:52656600-52680200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr3:52656600-52704600	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr3:52657000-52697200	Strong transcription	Liver	Liver
25	chr3:52657000-52697600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:52658000-52702800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr3:52660800-52704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:52664600-52701600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:52665400-52719200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:52666200-52702400	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:52666600-52683200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:52670400-52704600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:52670800-52680000	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:52670800-52682200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:52670800-52682800	Strong transcription	Osteobl	bone
36	chr3:52670800-52686000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:52670800-52686200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:52670800-52715400	Strong transcription	Dnd41	blood
39	chr3:52671000-52683000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:52671000-52697600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr3:52671000-52697600	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:52671000-52697800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr3:52671000-52697800	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr3:52671000-52700800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:52671000-52701000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr3:52671200-52680200	Strong transcription	Primary T cells from cord blood	blood
47	chr3:52671200-52682800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:52671200-52698000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:52671200-52698000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:52671400-52680200	Strong transcription	Sigmoid Colon	Sigmoid Colon

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