Variant report

Variant	rs73840235
Chromosome Location	chr3:53228014-53228015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:53147149..53149280-chr3:53227312..53230160,3	K562	blood:
2	chr3:53162914..53166776-chr3:53227642..53231042,4	MCF-7	breast:
3	chr3:53154170..53157066-chr3:53227293..53230182,2	MCF-7	breast:
4	chr3:53197949..53201671-chr3:53227603..53230780,3	MCF-7	breast:
5	chr3:53219801..53222487-chr3:53226191..53228055,3	K562	blood:
6	chr3:53192673..53196741-chr3:53226099..53230036,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163933	Chromatin interaction
ENSG00000163932	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1075865	1.00[ASN][1000 genomes]
rs6798141	1.00[ASN][1000 genomes]
rs73840237	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834699	chr3:53151876-53325808	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv517233	chr3:53175557-53321002	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53200600-53229600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:53202000-53228400	Weak transcription	Fetal Kidney	kidney
3	chr3:53202800-53229600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:53203600-53229800	Weak transcription	A549	lung
5	chr3:53205600-53229800	Weak transcription	Brain Angular Gyrus	brain
6	chr3:53209600-53228400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:53210000-53229000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:53210600-53228400	Strong transcription	Gastric	stomach
9	chr3:53214200-53229600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:53214400-53229600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:53214800-53228800	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:53214800-53229600	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr3:53214800-53229800	Weak transcription	Brain Substantia Nigra	brain
14	chr3:53215000-53229800	Weak transcription	Fetal Brain Female	brain
15	chr3:53215400-53228800	Strong transcription	Placenta	Placenta
16	chr3:53216000-53229800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:53216200-53229800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:53217800-53229600	Weak transcription	Brain Anterior Caudate	brain
19	chr3:53217800-53229800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:53219400-53229800	Weak transcription	K562	blood
21	chr3:53220000-53230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr3:53222000-53228400	Weak transcription	HSMMtube	muscle
23	chr3:53223200-53228200	Weak transcription	Osteobl	bone
24	chr3:53223200-53229200	Strong transcription	Fetal Intestine Small	intestine
25	chr3:53223800-53229000	Genic enhancers	Primary B cells from peripheral blood	blood
26	chr3:53224000-53229800	Weak transcription	Brain Germinal Matrix	brain
27	chr3:53224400-53229200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:53224400-53229800	Weak transcription	NHDF-Ad	bronchial
29	chr3:53224600-53230800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr3:53224800-53229800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:53225000-53229600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:53225000-53229600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:53225000-53229800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr3:53225200-53230200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr3:53225400-53229600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr3:53225600-53228400	Strong transcription	Thymus	Thymus
37	chr3:53225800-53228200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:53225800-53229600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr3:53226000-53228400	Genic enhancers	Adipose Nuclei	Adipose
40	chr3:53226000-53230000	Genic enhancers	Spleen	Spleen
41	chr3:53226200-53229800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:53226200-53229800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:53226200-53230600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr3:53226400-53228600	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr3:53226400-53228600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr3:53226400-53228800	Enhancers	Fetal Thymus	thymus
47	chr3:53226400-53229600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr3:53226400-53229800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr3:53226600-53228800	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr3:53226600-53229600	Weak transcription	Primary B cells from cord blood	blood

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