Variant report

Variant	rs73842586
Chromosome Location	chr3:83052315-83052316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1519001	1.00[AMR][1000 genomes]
rs73842577	1.00[AMR][1000 genomes]
rs73844717	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844731	1.00[AMR][1000 genomes]
rs73844737	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv877048	chr3:82869089-83324183	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv877051	chr3:82888913-83324183	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877054	chr3:82937940-83089596	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004114	chr3:83032534-83062217	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv877055	chr3:83039277-83324183	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1003667	chr3:83041379-83203406	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83048400-83054800	Enhancers	Dnd41	blood
2	chr3:83049000-83054800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:83049400-83053200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:83050000-83060800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:83050600-83053200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:83051400-83053200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:83052200-83052600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr3:83052200-83052600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr3:83052200-83054200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:83052200-83054600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:83052200-83054600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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