Variant report

Variant	rs73843510
Chromosome Location	chr3:85952988-85952989
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1448606	1.00[EUR][1000 genomes]
rs2009641	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4519715	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57177092	1.00[EUR][1000 genomes]
rs60819488	0.83[EUR][1000 genomes]
rs61327946	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61371129	1.00[EUR][1000 genomes]
rs61678625	1.00[EUR][1000 genomes]
rs6770050	1.00[EUR][1000 genomes]
rs73843505	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73843506	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73843507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73843508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73843512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845664	1.00[EUR][1000 genomes]
rs73845665	1.00[EUR][1000 genomes]
rs73845669	1.00[EUR][1000 genomes]
rs73845688	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845689	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7613828	1.00[EUR][1000 genomes]
rs7650537	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv877109	chr3:85892098-86006210	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv877110	chr3:85892098-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv460754	chr3:85917289-86006210	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv460755	chr3:85917289-86006210	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv590912	chr3:85917289-86006210	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
12	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
13	esv3496521	chr3:85950326-85954343	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv3496522	chr3:85950326-85954343	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85952200-85953400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:85952400-85953400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:85952400-85964400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:85952600-85953000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:85952600-85953200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:85952600-85953200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:85952600-85953400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:85952600-85953400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:85952600-85953400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:85952800-85953000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:85952800-85953200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:85952800-85953200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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