Variant report

Variant	rs73844626
Chromosome Location	chr4:119840965-119840966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10004721	1.00[AMR][1000 genomes]
rs11932966	1.00[AMR][1000 genomes]
rs11932992	1.00[AMR][1000 genomes]
rs28718468	1.00[AMR][1000 genomes]
rs73844621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119831600-119847200	Weak transcription	Right Atrium	heart
2	chr4:119833000-119845600	Weak transcription	Aorta	Aorta
3	chr4:119836600-119841600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:119837600-119841800	Enhancers	Osteobl	bone
5	chr4:119838000-119841400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:119838200-119851600	Enhancers	Rectal Smooth Muscle	rectum
7	chr4:119838400-119842000	Weak transcription	Left Ventricle	heart
8	chr4:119838800-119841400	Enhancers	NHLF	lung
9	chr4:119839600-119841800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:119839600-119843400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr4:119839800-119841600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:119839800-119841800	Enhancers	NHDF-Ad	bronchial
13	chr4:119839800-119847200	Weak transcription	Small Intestine	intestine
14	chr4:119840000-119841400	Enhancers	HUVEC	blood vessel
15	chr4:119840000-119841600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:119840000-119841800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:119840000-119841800	Enhancers	NH-A	brain
18	chr4:119840000-119842200	Weak transcription	Fetal Kidney	kidney
19	chr4:119840000-119845000	Weak transcription	NHEK	skin
20	chr4:119840200-119841400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:119840200-119843400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr4:119840200-119843600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr4:119840200-119843600	Enhancers	Fetal Stomach	stomach
24	chr4:119840200-119844000	Enhancers	Colon Smooth Muscle	Colon
25	chr4:119840400-119841000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:119840400-119841200	Enhancers	Ovary	ovary
27	chr4:119840400-119841200	Enhancers	Right Ventricle	heart
28	chr4:119840400-119841400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr4:119840400-119841800	Weak transcription	Brain Anterior Caudate	brain
30	chr4:119840600-119841200	Weak transcription	HSMM	muscle
31	chr4:119840600-119841400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:119840600-119841400	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr4:119840600-119841800	Enhancers	Fetal Heart	heart
34	chr4:119840800-119841000	Enhancers	Psoas Muscle	Psoas
35	chr4:119840800-119841200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links