Variant report

Variant	rs73845103
Chromosome Location	chr4:121186627-121186628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:121185242..121187871-chr4:121188856..121190633,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10006083	1.00[AMR][1000 genomes]
rs10028188	1.00[AMR][1000 genomes]
rs11930109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012236	0.83[AMR][1000 genomes]
rs28679486	1.00[AMR][1000 genomes]
rs34532006	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34864233	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59042587	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60577273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60782621	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73842902	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845105	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845106	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73845116	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845119	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845134	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845139	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845140	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845151	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv595333	chr4:121093248-121440368	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005240	chr4:121093285-121420997	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1002606	chr4:121145456-121194713	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121185400-121186800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links