Variant report
| Variant | rs73845251 |
|---|---|
| Chromosome Location | chr4:90000254-90000255 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:89992679..89996813-chr4:89997932..90000430,5 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs55707729 | 1.00[AFR][1000 genomes] |
| rs56048174 | 1.00[AFR][1000 genomes] |
| rs56058632 | 1.00[AFR][1000 genomes] |
| rs56215012 | 1.00[AFR][1000 genomes] |
| rs56321632 | 1.00[AFR][1000 genomes] |
| rs57422713 | 1.00[AFR][1000 genomes] |
| rs57791627 | 1.00[AFR][1000 genomes] |
| rs57961088 | 0.83[AFR][1000 genomes] |
| rs58046174 | 1.00[AFR][1000 genomes] |
| rs60706264 | 1.00[AFR][1000 genomes] |
| rs61064708 | 1.00[AFR][1000 genomes] |
| rs61433048 | 1.00[AFR][1000 genomes] |
| rs73843733 | 1.00[AFR][1000 genomes] |
| rs73843734 | 1.00[AFR][1000 genomes] |
| rs73843735 | 1.00[AFR][1000 genomes] |
| rs73845058 | 1.00[AFR][1000 genomes] |
| rs73845061 | 1.00[AFR][1000 genomes] |
| rs73845230 | 1.00[AFR][1000 genomes] |
| rs73845232 | 1.00[AFR][1000 genomes] |
| rs73845252 | 1.00[AFR][1000 genomes] |
| rs73847208 | 1.00[AFR][1000 genomes] |
| rs73847211 | 1.00[AFR][1000 genomes] |
| rs73847212 | 1.00[AFR][1000 genomes] |
| rs73847221 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv470051 | chr4:89644931-90643144 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007025 | chr4:89837734-90098046 | Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv537176 | chr4:89837734-90098046 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv1002448 | chr4:89933385-90128133 | Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 5 | nsv436954 | chr4:89984278-90003086 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:89996400-90009800 | Weak transcription | Pancreas | Pancrea |
