Variant report

Variant	rs73845420
Chromosome Location	chr4:121580850-121580851
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12507239	1.00[EUR][1000 genomes]
rs55925426	1.00[EUR][1000 genomes]
rs56014814	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56029376	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56349949	1.00[EUR][1000 genomes]
rs58568085	0.90[EUR][1000 genomes]
rs60100184	1.00[EUR][1000 genomes]
rs60414940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60660972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911539	1.00[EUR][1000 genomes]
rs72913588	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913597	1.00[EUR][1000 genomes]
rs72915508	1.00[EUR][1000 genomes]
rs72919561	1.00[EUR][1000 genomes]
rs72919574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72919576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72919578	1.00[EUR][1000 genomes]
rs73845419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845428	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121579600-121581000	Enhancers	Primary hematopoietic stem cells	blood
2	chr4:121580400-121581000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:121580600-121581000	Weak transcription	Spleen	Spleen
4	chr4:121580800-121581400	ZNF genes & repeats	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links