Variant report

Variant	rs73846116
Chromosome Location	chr3:89328116-89328117
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11925539	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35156943	0.80[AFR][1000 genomes]
rs6774287	1.00[EUR][1000 genomes]
rs9868305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590921	chr3:89294149-89392778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590922	chr3:89314862-89417064	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89326000-89328200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:89326800-89328400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:89327000-89328400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:89327000-89328600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:89327200-89328200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:89327200-89328200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:89327200-89328200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:89327200-89328200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:89327200-89328400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:89327400-89328400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:89328000-89328400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:89328000-89328600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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