Variant report

Variant	rs73846955
Chromosome Location	chr4:130989976-130989977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10015536	0.89[ASN][1000 genomes]
rs11099028	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11932792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11932919	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11934511	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11941757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11941795	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12499292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12504792	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12508724	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17050842	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28655759	0.89[ASN][1000 genomes]
rs35955852	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59730341	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60675145	1.00[ASN][1000 genomes]
rs6534758	0.89[ASN][1000 genomes]
rs6534759	0.89[ASN][1000 genomes]
rs6829014	0.89[ASN][1000 genomes]
rs73846903	0.89[ASN][1000 genomes]
rs73846904	0.89[ASN][1000 genomes]
rs73846957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73850054	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73850055	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7685504	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595412	chr4:130962263-131001046	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv461640	chr4:130962263-131003605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595413	chr4:130962263-131003605	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1027281	chr4:130962945-131005768	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1027051	chr4:130962945-131010834	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1019114	chr4:130962945-131013140	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1027197	chr4:130965914-130998219	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1028045	chr4:130965914-131004697	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv595414	chr4:130983055-131024471	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv595415	chr4:130983605-131046911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130988200-130990200	Enhancers	Liver	Liver
2	chr4:130989000-130990000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:130989000-130990000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:130989000-130990000	Enhancers	Fetal Intestine Small	intestine
5	chr4:130989600-130990000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:130989600-130995400	Weak transcription	Stomach Mucosa	stomach
7	chr4:130989800-130990000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links