Variant report

Variant	rs73848870
Chromosome Location	chr3:79429433-79429434
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs61120197	1.00[AMR][1000 genomes]
rs72898004	1.00[AMR][1000 genomes]
rs72898014	1.00[AMR][1000 genomes]
rs72898039	1.00[AMR][1000 genomes]
rs73848851	1.00[AMR][1000 genomes]
rs73848891	1.00[AMR][1000 genomes]
rs73848895	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851206	1.00[AMR][1000 genomes]
rs73851207	1.00[AMR][1000 genomes]
rs73851251	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3381015	chr3:79425678-79545174	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998248	chr3:79426615-79554963	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79427200-79431800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:79427800-79431800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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