Variant report

Variant	rs73850338
Chromosome Location	chr4:129434160-129434161
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:129433187..129435067-chr4:129474379..129476936,2	MCF-7	breast:
2	chr4:129403296..129405086-chr4:129433123..129435816,2	K562	blood:
3	chr4:129434134..129437730-chr4:129730733..129734391,6	K562	blood:
4	chr4:129429967..129432562-chr4:129432650..129436803,3	K562	blood:
5	chr4:129432424..129434544-chr4:129437663..129439865,2	K562	blood:
6	chr4:129432623..129434897-chr4:129435545..129438401,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LARP1B-2	chr4:129433874-129436412	ENSG00000246458

No data

Variant related genes	Relation type
ENSG00000077684	Chromatin interaction
ENSG00000273077	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11940014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17013357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73850336	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661118	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129376600-129435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:129425800-129445600	Weak transcription	Gastric	stomach
3	chr4:129429800-129434200	Weak transcription	HSMMtube	muscle
4	chr4:129430600-129438600	Weak transcription	Fetal Heart	heart
5	chr4:129431200-129440800	Weak transcription	Left Ventricle	heart
6	chr4:129431600-129438800	Weak transcription	Pancreas	Pancrea
7	chr4:129432800-129434400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:129433000-129438600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:129433200-129434400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:129433200-129434400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:129433200-129434400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:129433200-129434400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:129433200-129434600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:129433200-129435600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:129433200-129435800	Enhancers	NHDF-Ad	bronchial
16	chr4:129433200-129437600	Weak transcription	Right Atrium	heart
17	chr4:129433400-129435600	Enhancers	NHLF	lung
18	chr4:129433400-129437600	Weak transcription	HSMM	muscle
19	chr4:129433400-129443200	Weak transcription	Lung	lung
20	chr4:129433600-129434200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:129433600-129437200	Weak transcription	Fetal Lung	lung
22	chr4:129433600-129440000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:129434000-129434200	ZNF genes & repeats	A549	lung
24	chr4:129434000-129434400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr4:129434000-129434400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr4:129434000-129434400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr4:129434000-129434400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:129434000-129434600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:129434000-129434600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr4:129434000-129434600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr4:129434000-129434600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr4:129434000-129434600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr4:129434000-129435000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:129434000-129435200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr4:129434000-129435600	Enhancers	HUVEC	blood vessel
36	chr4:129434000-129435600	Enhancers	K562	blood
37	chr4:129434000-129435600	Enhancers	Osteobl	bone
38	chr4:129434000-129437600	Weak transcription	Placenta	Placenta

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