Variant report

Variant	rs73850438
Chromosome Location	chr3:79977881-79977882
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs57638616	1.00[AFR][1000 genomes]
rs58417335	1.00[AMR][1000 genomes]
rs58872712	1.00[AMR][1000 genomes]
rs59086056	1.00[AMR][1000 genomes]
rs73849750	1.00[AMR][1000 genomes]
rs73850426	1.00[AMR][1000 genomes]
rs73850439	1.00[AMR][1000 genomes]
rs73850652	1.00[AMR][1000 genomes]
rs73850653	1.00[AMR][1000 genomes]
rs73852614	1.00[AFR][1000 genomes]
rs73853837	1.00[AMR][1000 genomes]
rs73853841	1.00[AMR][1000 genomes]
rs73853843	1.00[AMR][1000 genomes]
rs73853844	1.00[AMR][1000 genomes]
rs73853845	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv834748	chr3:79828668-79985688	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79976600-79979400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links