Variant report

Variant	rs73850447
Chromosome Location	chr3:80003345-80003346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56364800	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58417335	0.89[AFR][1000 genomes]
rs58872712	0.89[AFR][1000 genomes]
rs59086056	0.89[AFR][1000 genomes]
rs59348349	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849750	0.89[AFR][1000 genomes]
rs73850426	0.89[AFR][1000 genomes]
rs73850652	0.89[AFR][1000 genomes]
rs73850653	0.89[AFR][1000 genomes]
rs73853837	0.89[AFR][1000 genomes]
rs73853841	0.89[AFR][1000 genomes]
rs73853843	0.89[AFR][1000 genomes]
rs73853844	0.89[AFR][1000 genomes]
rs73853845	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590740	chr3:79999534-80575042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80002400-80003400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:80002400-80003400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:80002400-80004200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:80002600-80004200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:80002800-80003600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:80002800-80003600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:80003200-80003600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:80003200-80004400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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