Variant report

Variant	rs73850826
Chromosome Location	chr4:143160955-143160956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16998523	1.00[AMR][1000 genomes]
rs56392311	1.00[AMR][1000 genomes]
rs57558331	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58600743	1.00[AMR][1000 genomes]
rs61286245	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6828181	1.00[AMR][1000 genomes]
rs6844562	1.00[AMR][1000 genomes]
rs73850816	1.00[AMR][1000 genomes]
rs73850823	1.00[AMR][1000 genomes]
rs73850837	1.00[AMR][1000 genomes]
rs73850838	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv595604	chr4:143077401-143228914	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830099	chr4:143138257-143285055	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv964745	chr4:143159565-143162633	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143058000-143181000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:143129200-143169600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:143135400-143184200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:143151000-143185000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:143151200-143174000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:143153800-143181000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:143157600-143173800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr4:143158200-143162400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:143158200-143173600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr4:143158400-143163000	Weak transcription	Primary T cells from cord blood	blood
11	chr4:143158400-143163800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:143158400-143174000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr4:143158600-143163400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:143158600-143173800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:143158800-143161800	Weak transcription	Dnd41	blood
16	chr4:143159200-143161000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:143159200-143181000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:143159200-143181000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:143159600-143161000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:143160200-143161000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr4:143160200-143162000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr4:143160200-143171000	Weak transcription	NHEK	skin
23	chr4:143160400-143162400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:143160400-143163600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:143160400-143163800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:143160400-143164000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:143160400-143167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:143160400-143180000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr4:143160600-143161400	Weak transcription	Fetal Heart	heart
30	chr4:143160600-143162800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:143160600-143162800	Weak transcription	Osteobl	bone
32	chr4:143160600-143163000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:143160600-143163800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:143160600-143163800	Weak transcription	HSMMtube	muscle
35	chr4:143160600-143163800	Weak transcription	NHDF-Ad	bronchial
36	chr4:143160600-143185000	Weak transcription	HMEC	breast
37	chr4:143160600-143186400	Weak transcription	HSMM	muscle

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