Variant report

Variant	rs73851498
Chromosome Location	chr3:110033425-110033426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55714057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55957862	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6782084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851496	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854006	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854007	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854010	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854012	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877334	chr3:109983269-110044601	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877335	chr3:109986271-110061676	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2757885	chr3:110013166-110095330	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2759168	chr3:110013166-110095330	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110031400-110034600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:110031400-110034600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:110033200-110033600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:110033200-110033600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:110033200-110033600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:110033200-110033600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:110033200-110033600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:110033200-110033600	Enhancers	Adipose Nuclei	Adipose
9	chr3:110033200-110033600	Enhancers	Liver	Liver
10	chr3:110033200-110033600	Enhancers	Brain Anterior Caudate	brain
11	chr3:110033200-110033600	Enhancers	Brain Hippocampus Middle	brain
12	chr3:110033200-110033600	Enhancers	Stomach Mucosa	stomach
13	chr3:110033200-110033600	Flanking Active TSS	Osteobl	bone
14	chr3:110033200-110033800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:110033200-110034000	Enhancers	NHDF-Ad	bronchial
16	chr3:110033400-110033600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:110033400-110033600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr3:110033400-110033600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr3:110033400-110033800	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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