Variant report

Variant	rs73852301
Chromosome Location	chr3:111194719-111194720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2675579	1.00[EUR][1000 genomes]
rs2698360	1.00[EUR][1000 genomes]
rs2932072	1.00[EUR][1000 genomes]
rs2950968	1.00[EUR][1000 genomes]
rs2950970	1.00[EUR][1000 genomes]
rs2950972	1.00[EUR][1000 genomes]
rs2971361	1.00[EUR][1000 genomes]
rs2971362	1.00[EUR][1000 genomes]
rs55768735	1.00[EUR][1000 genomes]
rs57101693	1.00[EUR][1000 genomes]
rs59852785	1.00[EUR][1000 genomes]
rs73852810	1.00[EUR][1000 genomes]
rs73855525	1.00[EUR][1000 genomes]
rs73855528	1.00[EUR][1000 genomes]
rs7633552	1.00[EUR][1000 genomes]
rs9818752	1.00[AMR][1000 genomes]
rs9839191	1.00[AMR][1000 genomes]
rs9869629	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111192000-111195200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:111192600-111195200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:111192600-111195200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:111192800-111195200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:111192800-111196000	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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