Variant report

Variant	rs73852391
Chromosome Location	chr3:110785269-110785270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11922642	1.00[AMR][1000 genomes]
rs11927028	1.00[AMR][1000 genomes]
rs55952708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57456643	0.86[AFR][1000 genomes]
rs60806916	1.00[AMR][1000 genomes]
rs6783186	1.00[AMR][1000 genomes]
rs6793952	1.00[AMR][1000 genomes]
rs6797322	1.00[AMR][1000 genomes]
rs6799961	1.00[AMR][1000 genomes]
rs73854904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7614134	1.00[AMR][1000 genomes]
rs9832519	1.00[AMR][1000 genomes]
rs9863967	1.00[AMR][1000 genomes]
rs9883283	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110765000-110788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:110775800-110786800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:110777800-110789000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:110782400-110788200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:110783400-110788800	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:110784200-110788800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:110784200-110788800	Weak transcription	Placenta	Placenta
8	chr3:110784600-110788200	Weak transcription	Fetal Brain Male	brain
9	chr3:110784600-110789000	Weak transcription	Left Ventricle	heart
10	chr3:110784800-110788400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:110785000-110788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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