Variant report

Variant	rs73853972
Chromosome Location	chr3:112453811-112453812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:112300907..112301738-chr3:112453034..112453898,3	MCF-7	breast:
2	chr3:112359771..112362364-chr3:112451864..112454869,4	MCF-7	breast:
3	chr3:112451598..112455262-chr3:112529642..112532611,4	MCF-7	breast:
4	chr3:112358708..112361458-chr3:112449187..112455006,7	MCF-7	breast:
5	chr3:112453334..112454209-chr3:112532709..112533764,9	MCF-7	breast:
6	chr3:112453633..112454262-chr3:112698168..112698781,2	MCF-7	breast:
7	chr3:112453063..112455589-chr3:112697859..112700402,2	MCF-7	breast:
8	chr3:112452493..112454987-chr3:112455903..112458185,2	K562	blood:
9	chr3:112361567..112362101-chr3:112453663..112454224,2	MCF-7	breast:
10	chr3:112453464..112454625-chr3:112532432..112533580,5	MCF-7	breast:
11	chr3:112361469..112362140-chr3:112453506..112454017,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16860051	1.00[AMR][1000 genomes]
rs16860052	1.00[AMR][1000 genomes]
rs6769227	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112452600-112455400	Enhancers	A549	lung
2	chr3:112452800-112461200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:112453000-112454000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:112453000-112454000	Enhancers	NHDF-Ad	bronchial
5	chr3:112453000-112459800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:112453200-112454000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:112453200-112454200	Enhancers	Placenta	Placenta
8	chr3:112453200-112455600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:112453400-112454000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:112453400-112457600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:112453400-112458400	Enhancers	Primary T cells from cord blood	blood
12	chr3:112453400-112461400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:112453600-112454000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:112453600-112454000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr3:112453600-112454200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr3:112453600-112454200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:112453600-112454200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr3:112453600-112455200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:112453600-112458200	Weak transcription	NHEK	skin
20	chr3:112453600-112458400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr3:112453600-112458400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr3:112453600-112461400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr3:112453800-112454000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr3:112453800-112454000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr3:112453800-112454000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:112453800-112454000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr3:112453800-112454000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:112453800-112454000	Enhancers	K562	blood
29	chr3:112453800-112454200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:112453800-112454200	Enhancers	Stomach Mucosa	stomach
31	chr3:112453800-112455200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:112453800-112455200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:112453800-112455800	Enhancers	Primary T cells fromperipheralblood	blood
34	chr3:112453800-112456000	Enhancers	Fetal Thymus	thymus
35	chr3:112453800-112456000	Enhancers	Thymus	Thymus
36	chr3:112453800-112456200	Enhancers	Primary B cells from peripheral blood	blood
37	chr3:112453800-112456200	Weak transcription	Osteobl	bone
38	chr3:112453800-112457200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:112453800-112458200	Weak transcription	HSMM	muscle
40	chr3:112453800-112458400	Weak transcription	HSMMtube	muscle
41	chr3:112453800-112461000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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