Variant report

Variant	rs73854488
Chromosome Location	chr3:119047360-119047361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119040997..119045560-chr3:119046722..119050872,5	K562	blood:
2	chr3:119040533..119045560-chr3:119045561..119050872,12	K562	blood:
3	chr3:119041366..119045154-chr3:119046425..119049987,5	MCF-7	breast:
4	chr3:119045537..119049626-chr3:119052248..119055183,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241155	Chromatin interaction
ENSG00000031081	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4687849	1.00[EUR][1000 genomes]
rs4687850	1.00[EUR][1000 genomes]
rs4687999	1.00[EUR][1000 genomes]
rs6803331	1.00[EUR][1000 genomes]
rs72960637	1.00[EUR][1000 genomes]
rs72960640	1.00[EUR][1000 genomes]
rs72960642	1.00[EUR][1000 genomes]
rs73854487	1.00[EUR][1000 genomes]
rs7646935	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119042600-119047800	Weak transcription	Ovary	ovary
2	chr3:119042600-119048000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:119042600-119048000	Weak transcription	Brain Angular Gyrus	brain
4	chr3:119042600-119048000	Weak transcription	NH-A	brain
5	chr3:119042600-119048200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:119042600-119048400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:119042600-119048400	Weak transcription	Aorta	Aorta
8	chr3:119042600-119048600	Weak transcription	HSMM	muscle
9	chr3:119042600-119050000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:119042600-119050200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:119042600-119050400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:119042600-119050400	Weak transcription	HSMMtube	muscle
13	chr3:119042600-119050400	Weak transcription	NHEK	skin
14	chr3:119042600-119054000	Weak transcription	NHLF	lung
15	chr3:119042600-119055600	Weak transcription	Fetal Brain Male	brain
16	chr3:119042800-119048000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:119042800-119048000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:119042800-119048000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:119042800-119048000	Weak transcription	Fetal Lung	lung
20	chr3:119042800-119048000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:119042800-119048000	Weak transcription	Right Atrium	heart
22	chr3:119042800-119048000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:119042800-119050400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:119042800-119050600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:119042800-119051600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:119042800-119051600	Weak transcription	Spleen	Spleen
27	chr3:119042800-119052800	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:119042800-119053000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:119042800-119056000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:119042800-119070600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:119042800-119072000	Weak transcription	Thymus	Thymus
32	chr3:119043000-119047400	Enhancers	GM12878-XiMat	blood
33	chr3:119043000-119048600	Weak transcription	Right Ventricle	heart
34	chr3:119043000-119050600	Weak transcription	Fetal Muscle Leg	muscle
35	chr3:119043000-119051600	Weak transcription	HUVEC	blood vessel
36	chr3:119043000-119069000	Weak transcription	Primary T cells from cord blood	blood
37	chr3:119043200-119048000	Weak transcription	Brain Anterior Caudate	brain
38	chr3:119043200-119048000	Weak transcription	Lung	lung
39	chr3:119043200-119062400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:119043600-119048400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:119043800-119048000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:119043800-119048600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:119043800-119050200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr3:119044400-119050400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr3:119044400-119050600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr3:119044400-119052000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr3:119045200-119047400	Enhancers	Brain Substantia Nigra	brain
48	chr3:119045400-119048000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:119045600-119047800	Weak transcription	Osteobl	bone
50	chr3:119045800-119048000	Weak transcription	Fetal Heart	heart

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