Variant report

Variant	rs73854500
Chromosome Location	chr3:113323604-113323605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113321581..113323817-chr3:113326713..113329166,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28545609	1.00[AMR][1000 genomes]
rs7630453	1.00[AMR][1000 genomes]
rs7648384	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113285200-113329800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:113285200-113343400	Weak transcription	Small Intestine	intestine
3	chr3:113296800-113324200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:113305000-113325000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:113305600-113324600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:113309200-113325000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:113311800-113324400	Strong transcription	Primary T cells from cord blood	blood
8	chr3:113313800-113324200	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:113317200-113330800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:113317800-113324200	Strong transcription	GM12878-XiMat	blood
11	chr3:113319600-113324600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:113320200-113324600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr3:113320400-113323800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:113320400-113323800	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr3:113320400-113324200	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr3:113320400-113324600	Strong transcription	Primary B cells from peripheral blood	blood
17	chr3:113320400-113333200	Weak transcription	Fetal Intestine Large	intestine
18	chr3:113320400-113345600	Weak transcription	Fetal Intestine Small	intestine
19	chr3:113320600-113325200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:113320800-113324000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:113320800-113324400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr3:113320800-113347600	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr3:113321000-113325200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:113321200-113325800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:113321200-113326200	Weak transcription	Psoas Muscle	Psoas
26	chr3:113321200-113331600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr3:113321200-113333000	Weak transcription	Spleen	Spleen
28	chr3:113321200-113349200	Weak transcription	Brain Angular Gyrus	brain
29	chr3:113321200-113349600	Weak transcription	Lung	lung
30	chr3:113321600-113324000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr3:113322400-113324200	Weak transcription	Thymus	Thymus
32	chr3:113322600-113324400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:113322600-113348600	Weak transcription	Colonic Mucosa	Colon
34	chr3:113322800-113324000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:113323000-113325000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr3:113323200-113324400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr3:113323200-113325000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr3:113323200-113325000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr3:113323200-113342400	Weak transcription	Pancreas	Pancrea
40	chr3:113323400-113324800	Weak transcription	Primary B cells from cord blood	blood
41	chr3:113323400-113325000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr3:113323400-113325200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr3:113323400-113325200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:113323400-113325400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr3:113323600-113324400	Weak transcription	Fetal Thymus	thymus
46	chr3:113323600-113325000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr3:113323600-113325000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr3:113323600-113325000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr3:113323600-113325000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:113323600-113325000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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