Variant report

Variant	rs73854827
Chromosome Location	chr3:98108645-98108646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:98108644-98108694	GM12878	blood:	n/a
2	chr3:98108644-98108694	AG04450	lung:	fetal
3	chr3:98108644-98108694	GM06990	blood:	n/a
4	chr3:98108644-98108694	GM12891	blood:	n/a
5	chr3:98108644-98108694	BE2_C	brain:	n/a
6	chr3:98108644-98108694	H1-hESC	embryonic stem cell:	embryo
7	chr3:98108644-98108694	Hela-S3	cervix:	n/a
8	chr3:98108644-98108694	NHDF-neo	bronchial:	n/a
9	chr3:98108644-98108694	MCF-7	breast:	n/a
10	chr3:98108644-98108694	BJ	skin:	n/a
11	chr3:98108644-98108694	LNCaP	prostate:	n/a
12	chr3:98108644-98108694	T-47D	breast:	n/a
13	chr3:98108644-98108694	HUVEC	blood vessel:	n/a
14	chr3:98108644-98108694	IMR90	lung:	fetal
15	chr3:98108644-98108694	SK-N-SH	brain:	n/a
16	chr3:98108644-98108694	HepG2	liver:	n/a
17	chr3:98108644-98108694	SK-N-SH_RA	brain:	n/a
18	chr3:98108644-98108694	CMK	blood:	n/a
19	chr3:98108644-98108694	GM12892	blood:	n/a
20	chr3:98108644-98108694	SK-N-MC	brain:	n/a
21	chr3:98108644-98108694	HCF	heart:	n/a
22	chr3:98108644-98108694	PANC-1	pancreas:	n/a
23	chr3:98108644-98108694	PFSK-1	brain:	n/a
24	chr3:98108644-98108694	HMEC	breast:	n/a
25	chr3:98108644-98108694	ECC-1	luminal epithelium:	n/a
26	chr3:98108644-98108694	HEEpiC	esophagus:	n/a
27	chr3:98108644-98108694	K562	blood:	n/a
28	chr3:98108644-98108694	A549	lung:	n/a
29	chr3:98108644-98108694	Caco-2	colon:	n/a
30	chr3:98108644-98108694	AG10803	skin:	n/a
31	chr3:98108644-98108694	GM19239	blood:	n/a
32	chr3:98108644-98108694	AG09309	skin:	n/a
33	chr3:98108644-98108694	U87	brain:	n/a
34	chr3:98108644-98108694	HRCEpiC	kidney:	n/a
35	chr3:98108644-98108694	NHBE	bronchial:	n/a
36	chr3:98108644-98108694	HCT-116	colon:	n/a
37	chr3:98108644-98108694	HRE	kidney:	n/a
38	chr3:98108644-98108694	HRPEpiC	eye:	n/a
39	chr3:98108644-98108694	HEK293	kidney:	embryo
40	chr3:98108644-98108694	ovcar-3	ovarian:	n/a
41	chr3:98108644-98108694	NT2-D1	testis:	n/a
42	chr3:98108644-98108694	RPTEC	kidney:	n/a
43	chr3:98108644-98108694	Hepatocyte	liver:	n/a
44	chr3:98108644-98108694	PrEC	prostate:	n/a
45	chr3:98108644-98108694	SAEC	small airway:	n/a
46	chr3:98108644-98108694	HAEpiC	amniotic membrane:	n/a
47	chr3:98108644-98108694	HPAEpiC	pulmonary alveolar:	n/a
48	chr3:98108644-98108694	ProgFib	skin:	n/a
49	chr3:98108644-98108694	NH-A	brain:	n/a
50	chr3:98108644-98108694	HCM	heart:	n/a

No data

Variant related genes	Relation type
OR5K3	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12636261	0.96[ASN][1000 genomes]
rs4857093	0.88[EUR][1000 genomes]
rs61214300	0.88[EUR][1000 genomes]
rs73854821	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1009918	chr3:97946030-98155450	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv528056	chr3:98101101-98317836	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv520503	chr3:98102801-98317836	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv834774	chr3:98108423-98274064	Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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