Variant report

Variant	rs73856559
Chromosome Location	chr4:133730666-133730667
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56165460	0.90[AFR][1000 genomes]
rs56324029	0.91[AFR][1000 genomes]
rs73856560	1.00[AFR][1000 genomes]
rs73856561	1.00[AFR][1000 genomes]
rs73856562	0.91[AFR][1000 genomes]
rs73856563	0.81[AFR][1000 genomes]
rs73856564	0.91[AFR][1000 genomes]
rs73856567	0.91[AFR][1000 genomes]
rs73856568	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880036	chr4:133513991-133852434	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2754902	chr4:133569612-133774665	Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2754286	chr4:133586208-133764270	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv880039	chr4:133609463-133750519	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv818273	chr4:133685637-133731875	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470075	chr4:133703268-133786573	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2754000	chr4:133707298-133774665	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1019110	chr4:133717769-134026923	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv880040	chr4:133721560-133852434	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv880041	chr4:133728852-133814532	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:133730200-133732600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:133730600-133731000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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