Variant report

Variant	rs73856928
Chromosome Location	chr3:118668067-118668068
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:118654131..118656982-chr3:118667151..118670304,3	K562	blood:
2	chr3:118655482..118657417-chr3:118667049..118669730,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6801480	1.00[AFR][1000 genomes]
rs73856926	0.87[AFR][1000 genomes]
rs73856933	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1010475	chr3:118657382-118789714	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118658000-118668400	Weak transcription	A549	lung
2	chr3:118662000-118679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:118662000-118679800	Weak transcription	Ovary	ovary
4	chr3:118662800-118672000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:118662800-118672400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:118664400-118676400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:118665400-118668200	Weak transcription	Fetal Heart	heart
8	chr3:118665600-118668800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:118665600-118669000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:118666200-118668200	Weak transcription	Brain Anterior Caudate	brain
11	chr3:118666200-118677800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:118666400-118669800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:118666600-118668200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr3:118666600-118668400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr3:118666600-118669200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:118666600-118669800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:118666600-118670200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:118666800-118669200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr3:118666800-118669400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr3:118666800-118669400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr3:118667000-118668800	Enhancers	Primary T cells fromperipheralblood	blood
22	chr3:118667000-118668800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:118667200-118668800	Enhancers	Brain Hippocampus Middle	brain
24	chr3:118667200-118668800	Enhancers	Placenta	Placenta
25	chr3:118667400-118668200	Weak transcription	Brain Angular Gyrus	brain
26	chr3:118667400-118668400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:118667800-118668800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr3:118668000-118668400	Flanking Active TSS	Primary T cells from cord blood	blood
29	chr3:118668000-118668600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:118668000-118669800	Enhancers	Brain Substantia Nigra	brain
31	chr3:118668000-118670000	Enhancers	Brain Cingulate Gyrus	brain

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