Variant report

Variant	rs73857005
Chromosome Location	chr4:149319107-149319108
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149318788..149321566-chr4:149363942..149366140,2	K562	blood:

Variant related genes	Relation type
ENSG00000151623	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56086073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60914042	0.85[AFR][1000 genomes]
rs61061891	1.00[AMR][1000 genomes]
rs61756925	0.82[AFR][1000 genomes]
rs61762843	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61764783	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6828378	1.00[AMR][1000 genomes]
rs73853726	1.00[AMR][1000 genomes]
rs73854502	0.81[AFR][1000 genomes]
rs73857006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857009	0.85[AFR][1000 genomes]
rs7683540	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:149307600-149336600	Weak transcription	Aorta	Aorta
4	chr4:149309400-149320000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:149312800-149338800	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:149313200-149326400	Weak transcription	Fetal Intestine Small	intestine
7	chr4:149315800-149326400	Weak transcription	Right Ventricle	heart
8	chr4:149316800-149320600	Enhancers	Fetal Heart	heart
9	chr4:149317200-149319200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:149317800-149321400	Enhancers	Colon Smooth Muscle	Colon
11	chr4:149318000-149319200	Enhancers	Liver	Liver
12	chr4:149318200-149319200	Enhancers	Fetal Muscle Leg	muscle
13	chr4:149318200-149319200	Enhancers	Fetal Stomach	stomach
14	chr4:149318200-149319200	Enhancers	Left Ventricle	heart
15	chr4:149318200-149319200	Enhancers	Lung	lung
16	chr4:149318200-149319200	Enhancers	Pancreas	Pancrea
17	chr4:149318200-149319200	Enhancers	Psoas Muscle	Psoas
18	chr4:149318200-149319200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr4:149318200-149319200	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr4:149318200-149319200	Enhancers	Small Intestine	intestine
21	chr4:149318200-149319400	Enhancers	Ovary	ovary
22	chr4:149318200-149320400	Enhancers	Stomach Mucosa	stomach
23	chr4:149318400-149319200	Enhancers	Esophagus	oesophagus
24	chr4:149318400-149319400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr4:149318400-149319400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr4:149318600-149320800	Weak transcription	Fetal Lung	lung
27	chr4:149318600-149326400	Weak transcription	Right Atrium	heart
28	chr4:149318600-149327400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:149318800-149319200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:149319000-149339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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