Variant report

Variant	rs73857851
Chromosome Location	chr3:98790084-98790085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55983944	1.00[AMR][1000 genomes]
rs6777085	1.00[AMR][1000 genomes]
rs73857895	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857896	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857897	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73859873	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv432463	chr3:98751310-98796310	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv1004227	chr3:98751371-98803792	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv460769	chr3:98766326-98804408	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591089	chr3:98766326-98804408	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv963272	chr3:98769494-98794208	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98785800-98790400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:98789000-98790200	Enhancers	Fetal Brain Male	brain
3	chr3:98789400-98790200	Enhancers	Brain Angular Gyrus	brain
4	chr3:98789400-98791000	Enhancers	Brain Substantia Nigra	brain
5	chr3:98789400-98791200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:98789800-98790200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:98789800-98790600	Enhancers	HMEC	breast
8	chr3:98789800-98790800	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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