Variant report

Variant	rs73860606
Chromosome Location	chr3:100123345-100123346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100116341..100122043-chr3:100122556..100129449,8	MCF-7	breast:
2	chr3:100102691..100105563-chr3:100122980..100125104,2	MCF-7	breast:
3	chr3:100117960..100119967-chr3:100122961..100124652,2	K562	blood:
4	chr3:100120818..100123698-chr3:100370041..100372201,2	K562	blood:

Variant related genes	Relation type
ENSG00000206535	Chromatin interaction
ENSG00000154174	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59720880	1.00[AMR][1000 genomes]
rs72936594	1.00[AMR][1000 genomes]
rs72938947	1.00[AMR][1000 genomes]
rs72938983	1.00[AMR][1000 genomes]
rs72938993	1.00[AMR][1000 genomes]
rs72943205	1.00[AMR][1000 genomes]
rs73860640	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100118200-100123400	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr3:100118200-100123600	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr3:100118800-100123400	Active TSS	GM12878-XiMat	blood
4	chr3:100119200-100124600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:100121000-100127000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:100121000-100127000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:100121000-100127000	Weak transcription	Gastric	stomach
8	chr3:100121200-100123400	Flanking Active TSS	Dnd41	blood
9	chr3:100121400-100123400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:100121400-100123400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:100121400-100124200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr3:100121600-100123400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:100121600-100123400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr3:100121800-100131000	Weak transcription	Psoas Muscle	Psoas
15	chr3:100122000-100124400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr3:100122000-100127000	Weak transcription	Aorta	Aorta
17	chr3:100122000-100143800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:100122400-100123400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:100122400-100123400	Enhancers	Fetal Intestine Small	intestine
20	chr3:100122400-100127000	Weak transcription	Thymus	Thymus
21	chr3:100122400-100132400	Weak transcription	Primary T cells from cord blood	blood
22	chr3:100122600-100123400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr3:100122600-100123400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:100122600-100123600	Flanking Active TSS	Liver	Liver
25	chr3:100122600-100124400	Weak transcription	Fetal Intestine Large	intestine
26	chr3:100122600-100126200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:100122600-100127000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:100122600-100127000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:100122600-100129800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:100122600-100132400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr3:100122600-100133600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:100122600-100149200	Weak transcription	Left Ventricle	heart
33	chr3:100122800-100123400	Enhancers	Fetal Stomach	stomach
34	chr3:100122800-100123400	Enhancers	NHDF-Ad	bronchial
35	chr3:100122800-100123600	Flanking Active TSS	HepG2	liver
36	chr3:100122800-100126000	Weak transcription	Brain Hippocampus Middle	brain
37	chr3:100122800-100126000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr3:100122800-100126200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr3:100122800-100126400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:100122800-100127000	Weak transcription	Pancreas	Pancrea
41	chr3:100122800-100129800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:100122800-100131600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr3:100123000-100123400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr3:100123000-100123400	Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr3:100123000-100123400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr3:100123000-100123400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:100123000-100123400	Active TSS	Brain Anterior Caudate	brain
48	chr3:100123000-100123400	Flanking Active TSS	K562	blood
49	chr3:100123000-100124200	Enhancers	Hela-S3	cervix
50	chr3:100123000-100129000	Weak transcription	NHLF	lung

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